Literature DB >> 15916554

Systems biology may work when we learn to understand the parts in terms of the whole.

A Cornish-Bowden1, M L Cárdenas.   

Abstract

The first point to note about whether systems biology will work is that the essential idea of systems biology is not new: there has been interest in it, as well as efforts to apply it, since the middle of the 20th century. The difference now is that it has become fashionable, with an explosion in the number of publications using the two words, albeit not always with the same meaning. The reductionist approach remains dominant, however, and systems biology is often seen as no more than integration of diverse data into models of systems. This way of thinking needs to be changed if systems biology is to lead to an understanding of life and to provide the benefits that are expected from it. The emphasis ought to be on the needs of the system as a whole for understanding the components, not the converse. General properties of metabolic systems, such as feed-back inhibition, can be properly understood by taking account of supply and demand, i.e. the requirements of the system as a whole, but this is often overlooked. Metabolism tends to be viewed as static, although enzymes (and proteins in general) are continuously synthesized and degraded. The fact that they are themselves therefore metabolites introduces great complexity to metabolism, including an implication of infinite regress; understanding how living organisms escape from this will be an essential step towards understanding life.

Mesh:

Year:  2005        PMID: 15916554     DOI: 10.1042/BST0330516

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  6 in total

1.  Unraveling the complex regulatory relationships between metabolism and signal transduction in cancer.

Authors:  Michelle L Wynn; Sofia D Merajver; Santiago Schnell
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 2.  Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology.

Authors:  Bud Mishra
Journal:  J R Soc Interface       Date:  2009-04-08       Impact factor: 4.118

3.  Short-Term Transcriptional Response of Microbial Communities to Nitrogen Fertilization in a Pine Forest Soil.

Authors:  Michaeline B N Albright; Renee Johansen; Deanna Lopez; La Verne Gallegos-Graves; Blaire Steven; Cheryl R Kuske; John Dunbar
Journal:  Appl Environ Microbiol       Date:  2018-07-17       Impact factor: 4.792

Review 4.  So what do we really mean when we say that systems biology is holistic?

Authors:  Derek Gatherer
Journal:  BMC Syst Biol       Date:  2010-03-12

5.  Ruminant metabolic systems biology: reconstruction and integration of transcriptome dynamics underlying functional responses of tissues to nutrition and physiological state.

Authors:  Massimo Bionaz; Juan J Loor
Journal:  Gene Regul Syst Bio       Date:  2012-06-25

Review 6.  Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective.

Authors:  Wally C van Heeswijk; Hans V Westerhoff; Fred C Boogerd
Journal:  Microbiol Mol Biol Rev       Date:  2013-12       Impact factor: 11.056

  6 in total

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