Literature DB >> 15916549

Ribosome crystallography: catalysis and evolution of peptide-bond formation, nascent chain elongation and its co-translational folding.

A Bashan1, A Yonath.   

Abstract

A ribosome is a ribozyme polymerizing amino acids, exploiting positional- and substrate-mediated chemical catalysis. We showed that peptide-bond formation is facilitated by the ribosomal architectural frame, provided by a sizable symmetry-related region in and around the peptidyl transferase centre, suggesting that the ribosomal active site was evolved by gene fusion. Mobility in tunnel components is exploited for elongation arrest as well as for trafficking nascent proteins into the folding space bordered by the bacterial chaperone, namely the trigger factor.

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Year:  2005        PMID: 15916549     DOI: 10.1042/BST0330488

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  6 in total

1.  The transition state for formation of the peptide bond in the ribosome.

Authors:  Asta Gindulyte; Anat Bashan; Ilana Agmon; Lou Massa; Ada Yonath; Jerome Karle
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-28       Impact factor: 11.205

2.  Modeling protein folding in vivo.

Authors:  Irina Sorokina; Arcady Mushegian
Journal:  Biol Direct       Date:  2018-07-06       Impact factor: 4.540

3.  Selective incorporation of proteinaceous over nonproteinaceous cationic amino acids in model prebiotic oligomerization reactions.

Authors:  Moran Frenkel-Pinter; Jay W Haynes; Martin C; Anton S Petrov; Bradley T Burcar; Ramanarayanan Krishnamurthy; Nicholas V Hud; Luke J Leman; Loren Dean Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-29       Impact factor: 11.205

Review 4.  Is Protein Folding a Thermodynamically Unfavorable, Active, Energy-Dependent Process?

Authors:  Irina Sorokina; Arcady R Mushegian; Eugene V Koonin
Journal:  Int J Mol Sci       Date:  2022-01-04       Impact factor: 5.923

5.  tRNA Core Hypothesis for the Transition from the RNA World to the Ribonucleoprotein World.

Authors:  Savio T de Farias; Thais G Rêgo; Marco V José
Journal:  Life (Basel)       Date:  2016-03-23

6.  Rotational restriction of nascent peptides as an essential element of co-translational protein folding: possible molecular players and structural consequences.

Authors:  Irina Sorokina; Arcady Mushegian
Journal:  Biol Direct       Date:  2017-05-31       Impact factor: 4.540

  6 in total

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