Literature DB >> 15913797

Usage of dried blood spots for molecular diagnosis and monitoring HIV-1 infection.

Sumonmal Uttayamakul1, Sirirat Likanonsakul, Rujanee Sunthornkachit, Karoon Kuntiranont, Suda Louisirirotchanakul, Achara Chaovavanich, Vipa Thiamchai, Sombat Tanprasertsuk, Ruengpung Sutthent.   

Abstract

The usage of dried blood spots as specimens for diagnosis and monitoring of HIV-1 infection in Thailand was evaluated. EDTA blood samples, which were collected from 100 HIV seronegative and 109 HIV seropositive individuals, were tested on dried blood spots; Whatman, Schleicher and Schuell (S&amp;S) No. 903 and S&amp;S IsoCode filter paper. Nucleic acid was extracted and used as a template for HIV-1 proviral DNA detection by an "in-house" multiplex PCR and a commercial Amplicor HIV-1 PCR test (Roche, version 1.0). HIV-1 RNA qualitative (QL) and quantitative (QT) detection was determined by Nucleic Acid Sequence Based Amplification (NASBA). The average DNA per blood spot recovered from Whatman and S&amp;S IsoCode was not statistically different (p = 0.512) with a range of 218.9+/-46.84 and 225.63+/-88.33 microg, respectively. The concordance of HIV-1 proviral DNA detection by PCR from dried blood spots Whatman and S&amp;S IsoCode was 94% versus 89.4% for sensitivity and 100% versus 100% for specificity. The sensitivity and specificity of HIV-1 RNA QL detection in dried blood spots was 89.7 and 97.5%, respectively. The HIV-1 RNA QT from dried blood spots showed a good correlation in paired dried blood spots and plasma with Pearson correlation, r = 0.817 (R2 = 0.667, P < 0.05). The data showed that dried blood spots could be used for the diagnosis and monitoring of HIV-1 infection.

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Year:  2005        PMID: 15913797     DOI: 10.1016/j.jviromet.2005.04.010

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  18 in total

1.  Application of Polymerase Chain Reaction to Detect HIV-1 DNA in Pools of Dried Blood Spots.

Authors:  Vemu Lakshmi; Talasila Sudha; Rakhi Dandona; Dandona Rakhi; G Anil Kumar; G Anilkumar; Lalit Dandona
Journal:  Indian J Microbiol       Date:  2011-01-28       Impact factor: 2.461

2.  Novel application of Locked Nucleic Acid chemistry for a Taqman assay for measuring diverse human immunodeficiency virus type 1 subtypes.

Authors:  Peilin Li; Theodore Ruel; Katsuya Fujimoto; Hiroyu Hatano; Steven Yukl; Leigh Anne Eller; Teri Liegler; Moses Kamya; Anne Gassasira; Grant Dorsey; Philip J Rosenthal; Diane V Havlir; Joseph K Wong
Journal:  J Virol Methods       Date:  2010-09-21       Impact factor: 2.014

Review 3.  Innovations in health and demographic surveillance systems to establish the causal impacts of HIV policies.

Authors:  Kobus Herbst; Matthew Law; Pascal Geldsetzer; Frank Tanser; Guy Harling; Till Bärnighausen
Journal:  Curr Opin HIV AIDS       Date:  2015-11       Impact factor: 4.283

Review 4.  HIV/AIDS epidemiology, pathogenesis, prevention, and treatment.

Authors:  Viviana Simon; David D Ho; Quarraisha Abdool Karim
Journal:  Lancet       Date:  2006-08-05       Impact factor: 79.321

5.  Real-time PCR assay using specimens on filter disks as a template for detection of cytomegalovirus in urine.

Authors:  Naoki Nozawa; Shin Koyano; Yumiko Yamamoto; Yuhki Inami; Ichiro Kurane; Naoki Inoue
Journal:  J Clin Microbiol       Date:  2007-02-07       Impact factor: 5.948

6.  Prospective evaluation of diagnostic accuracy of dried blood spots from finger prick samples for determination of HIV-1 load with the NucliSENS Easy-Q HIV-1 version 2.0 assay in Malawi.

Authors:  Emmanuel Fajardo; Carol A Metcalf; Pascale Chaillet; Lucia Aleixo; Pieter Pannus; Isabella Panunzi; Laura Triviño; Tom Ellman; Andrew Likaka; Reuben Mwenda
Journal:  J Clin Microbiol       Date:  2014-02-05       Impact factor: 5.948

7.  A microfluidic device for dry sample preservation in remote settings.

Authors:  Stefano Begolo; Feng Shen; Rustem F Ismagilov
Journal:  Lab Chip       Date:  2013-11-21       Impact factor: 6.799

8.  Comparison of the Gen-Probe Aptima HIV-1 and Abbott HIV-1 qualitative assays with the Roche Amplicor HIV-1 DNA assay for early infant diagnosis using dried blood spots.

Authors:  Julie A E Nelson; J Tyler Hawkins; Maria Schanz; Katie Mollan; Melissa B Miller; John L Schmitz; Susan A Fiscus
Journal:  J Clin Virol       Date:  2014-06-02       Impact factor: 3.168

9.  Overseas processing of dried blood spots for timely diagnosis of HIV in Haitian infants.

Authors:  Louise C Ivers; Mary Catherine Smith Fawzi; Julie Mann; Jean-Gregory Jerome; Maxi Raymonville; Joia S Mukherjee
Journal:  Rev Panam Salud Publica       Date:  2008-11

10.  Evaluation of quantification of HIV-1 RNA viral load in plasma and dried blood spots by use of the semiautomated Cobas Amplicor assay and the fully automated Cobas Ampliprep/TaqMan assay, version 2.0, in Kisumu, Kenya.

Authors:  Kenneth N Ouma; Sridhar V Basavaraju; Jully A Okonji; John Williamson; Timothy K Thomas; Lisa A Mills; John N Nkengasong; Clement Zeh
Journal:  J Clin Microbiol       Date:  2013-02-06       Impact factor: 5.948

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