Literature DB >> 15912573

Molecular dynamics simulations of protein G challenge NMR-derived correlated backbone motions.

Oliver F Lange1, Helmut Grubmüller, Bert L de Groot.   

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Year:  2005        PMID： 15912573     DOI： 10.1002/anie.200462957

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  15 in total

1.  A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations.

Authors:  Bethany L Kormos; Anne M Baranger; David L Beveridge
Journal:  J Struct Biol       Date:  2006-11-10       Impact factor: 2.867

2.  Correlated motions and interactions at the onset of the DNA-induced partial unfolding of Ets-1.

Authors:  Hiqmet Kamberaj; Arjan van der Vaart
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

3.  Extracting the causality of correlated motions from molecular dynamics simulations.

Authors:  Hiqmet Kamberaj; Arjan van der Vaart
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

4.  Variability of the Cyclin-Dependent Kinase 2 Flexibility Without Significant Change in the Initial Conformation of the Protein or Its Environment; a Computational Study.

Authors:  Mohammad Taghizadeh; Bahram Goliaei; Armin Madadkar-Sobhani
Journal:  Iran J Biotechnol       Date:  2016-06       Impact factor: 1.671

5.  Biophysical Inference of Epistasis and the Effects of Mutations on Protein Stability and Function.

Authors:  Jakub Otwinowski
Journal:  Mol Biol Evol       Date:  2018-10-01       Impact factor: 16.240

6.  A comprehensive biophysical description of pairwise epistasis throughout an entire protein domain.

Authors:  C Anders Olson; Nicholas C Wu; Ren Sun
Journal:  Curr Biol       Date:  2014-10-16       Impact factor: 10.834

Review 7.  Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles.

Authors:  R Bryn Fenwick; Santi Esteban-Martín; Xavier Salvatella
Journal:  Eur Biophys J       Date:  2011-11-17       Impact factor: 1.733

8.  Modeling conformational ensembles of slow functional motions in Pin1-WW.

Authors:  Faruck Morcos; Santanu Chatterjee; Christopher L McClendon; Paul R Brenner; Roberto López-Rendón; John Zintsmaster; Maria Ercsey-Ravasz; Christopher R Sweet; Matthew P Jacobson; Jeffrey W Peng; Jesús A Izaguirre
Journal:  PLoS Comput Biol       Date:  2010-12-02       Impact factor: 4.475

9.  Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles.

Authors:  Christopher L McClendon; Gregory Friedland; David L Mobley; Homeira Amirkhani; Matthew P Jacobson
Journal:  J Chem Theory Comput       Date:  2009-09-08       Impact factor: 6.006

10.  Long-range intra-protein communication can be transmitted by correlated side-chain fluctuations alone.

Authors:  Kateri H Dubay; Jacques P Bothma; Phillip L Geissler
Journal:  PLoS Comput Biol       Date:  2011-09-29       Impact factor: 4.475
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