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Literature DB >> 15908416

Combining suppression subtractive hybridization and microarrays to map the intraspecies phylogeny of Flavobacterium psychrophilum.

Marilyn Soule¹, Kenneth Cain, Stacey LaFrentz, Douglas R Call.

Abstract

Reciprocal subtractive libraries were prepared for two strains of Flavobacterium psychrophilum, one virulent and the other avirulent in a trout challenge model. Unique clones were sequenced and their distribution assessed among 34 strains. The analysis showed that F. psychrophilum is composed of two genetic lineages, possibly reflecting host specificity.

Entities: Species

Mesh：

Year: 2005 PMID： 15908416 PMCID： PMC1111865 DOI： 10.1128/IAI.73.6.3799-3802.2005

Source DB: PubMed Journal: Infect Immun ISSN： 0019-9567 Impact factor: 3.441

14 in total

1. Reproducible methods for experimental infection with Flavobacterium psychrophilum in rainbow trout Oncorhynchus mykiss.

Authors: L Madsen; I Dalsgaard
Journal: Dis Aquat Organ Date: 1999-05-31 Impact factor: 1.802

2. Purification and characterization of a membrane glycoprotein from the fish pathogen Flavobacterium psychrophilum.

Authors: C Merle; D Faure; M-C Urdaci; M Le Hénaff
Journal: J Appl Microbiol Date: 2003 Impact factor: 3.772

3. Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays.

Authors: Adelaide E Warsen; Melissa J Krug; Stacey LaFrentz; Danielle R Stanek; Frank J Loge; Douglas R Call
Journal: Appl Environ Microbiol Date: 2004-07 Impact factor: 4.792

Review 4. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

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Journal: Nucleic Acids Res Date: 1997-09-01 Impact factor: 16.971

5. Antibiotic susceptibility testing by a standardized single disk method.

Authors: A W Bauer; W M Kirby; J C Sherris; M Turck
Journal: Am J Clin Pathol Date: 1966-04 Impact factor: 2.493

6. Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing.

Authors: Monica K Borucki; So Hyun Kim; Douglas R Call; Sandra C Smole; Franco Pagotto
Journal: J Clin Microbiol Date: 2004-11 Impact factor: 5.948

Review 7. Flavobacterium psychrophilum infections in salmonid fish.

Authors: A Nematollahi; A Decostere; F Pasmans; F Haesebrouck
Journal: J Fish Dis Date: 2003-10 Impact factor: 2.767

8. Passive immunization of rainbow trout, Oncorhynchus mykiss (Walbaum), against Flavobacterium psychrophilum, the causative agent of bacterial coldwater disease and rainbow trout fry syndrome.

Authors: B R LaFrentz; S E LaPatra; G R Jones; K D Cain
Journal: J Fish Dis Date: 2003-07 Impact factor: 2.767

9. Development of genetic techniques for the psychrotrophic fish pathogen Flavobacterium psychrophilum.

Authors: B Alvarez; P Secades; M J McBride; J A Guijarro
Journal: Appl Environ Microbiol Date: 2004-01 Impact factor: 4.792

10. Protective immunity in rainbow trout Oncorhynchus mykiss following immunization with distinct molecular mass fractions isolated from Flavobacterium psychrophilum.

Authors: Benjamin R LaFrentz; Scott E LaPatra; Gerald R Jones; Kenneth D Cain
Journal: Dis Aquat Organ Date: 2004-04-21 Impact factor: 1.802

8 in total

1. A mutation in Flavobacterium psychrophilum tlpB inhibits gliding motility and induces biofilm formation.

Authors: B Alvarez; P Secades; M Prieto; M J McBride; J A Guijarro
Journal: Appl Environ Microbiol Date: 2006-06 Impact factor: 4.792

2. Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum.

Authors: Pierre Nicolas; Stanislas Mondot; Guillaume Achaz; Catherine Bouchenot; Jean-François Bernardet; Eric Duchaud
Journal: Appl Environ Microbiol Date: 2008-04-18 Impact factor: 4.792

3. Genetic Diversity of Flavobacterium psychrophilum Isolates from Three Oncorhynchus spp. in the United States, as Revealed by Multilocus Sequence Typing.

Authors: Danielle Van Vliet; Gregory D Wiens; Thomas P Loch; Pierre Nicolas; Mohamed Faisal
Journal: Appl Environ Microbiol Date: 2016-05-16 Impact factor: 4.792

4. Identification of cold-temperature-regulated genes in Flavobacterium psychrophilum.

Authors: Shohreh Hesami; Devon S Metcalf; John S Lumsden; Janet I Macinnes
Journal: Appl Environ Microbiol Date: 2011-01-07 Impact factor: 4.792

5. Using DNA microarrays to identify library-independent markers for bacterial source tracking.

Authors: Marilyn Soule; Edward Kuhn; Frank Loge; John Gay; Douglas R Call
Journal: Appl Environ Microbiol Date: 2006-03 Impact factor: 4.792

6. Potential mechanisms of attenuation for rifampicin-passaged strains of Flavobacterium psychrophilum.

Authors: Karol Gliniewicz; Mark Wildung; Lisa H Orfe; Gregory D Wiens; Kenneth D Cain; Kevin K Lahmers; Kevin R Snekvik; Douglas R Call
Journal: BMC Microbiol Date: 2015-09-16 Impact factor: 3.605

7. Complete Genome Sequence of Flavobacterium psychrophilum Strain CSF259-93, Used To Select Rainbow Trout for Increased Genetic Resistance against Bacterial Cold Water Disease.

Authors: Gregory D Wiens; Scott E LaPatra; Timothy J Welch; Caird Rexroad; Douglas R Call; Kenneth D Cain; Benjamin R LaFrentz; Benjamin Vaisvil; Daniel P Schmitt; Vinayak Kapatral
Journal: Genome Announc Date: 2014-09-18

8. Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays.

Authors: John H E Nash; Wendy A Findlay; Christian C Luebbert; Oksana L Mykytczuk; Simon J Foote; Eduardo N Taboada; Catherine D Carrillo; Jessica M Boyd; Duncan J Colquhoun; Michael E Reith; Laura L Brown
Journal: BMC Genomics Date: 2006-03-07 Impact factor: 3.969

8 in total