Literature DB >> 15907485

N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA.

Anselm Sauerwald1, Devarasetty Sitaramaiah, James A McCloskey, Dieter Söll, Pamela F Crain.   

Abstract

Post-transcriptionally modified nucleosides are constituents of transfer RNA (tRNA) that are known to influence tertiary structure, stability and coding properties. Modifications in unfractionated tRNA from the phylogenetically unique archaeal methanogen Methanopyrus kandleri (optimal growth temperature 98 degrees C) were studied using liquid chromatography-mass spectrometry to establish the extent to which they might differ from those of other methanogens. The exceptionally diverse population of nucleosides included four new nucleosides of unknown structure, and one that was characterized as N(6)-acetyladenosine, a new RNA constituent. The nucleoside modification pattern in M. kandleri tRNA is notably different from that of other archaeal methanogens, and is closer to that of the thermophilic crenarchaeota.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15907485     DOI: 10.1016/j.febslet.2005.04.014

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  10 in total

1.  Distinct Modified Nucleosides in tRNATrp from the Hyperthermophilic Archaeon Thermococcus kodakarensis and Requirement of tRNA m2G10/m2 2G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures.

Authors:  Akira Hirata; Takeo Suzuki; Tomoko Nagano; Daishiro Fujii; Mizuki Okamoto; Manaka Sora; Todd M Lowe; Tamotsu Kanai; Haruyuki Atomi; Tsutomu Suzuki; Hiroyuki Hori
Journal:  J Bacteriol       Date:  2019-10-04       Impact factor: 3.490

2.  RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri.

Authors:  Andreas A H Su; Vanessa Tripp; Lennart Randau
Journal:  Nucleic Acids Res       Date:  2013-04-25       Impact factor: 16.971

3.  The RNA Modification Database, RNAMDB: 2011 update.

Authors:  William A Cantara; Pamela F Crain; Jef Rozenski; James A McCloskey; Kimberly A Harris; Xiaonong Zhang; Franck A P Vendeix; Daniele Fabris; Paul F Agris
Journal:  Nucleic Acids Res       Date:  2010-11-10       Impact factor: 16.971

4.  Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14.

Authors:  Sheena Menezes; Kirk W Gaston; Kady L Krivos; Ethel E Apolinario; Norbert O Reich; Kevin R Sowers; Patrick A Limbach; John J Perona
Journal:  Nucleic Acids Res       Date:  2011-06-21       Impact factor: 16.971

Review 5.  Naturally occurring modified ribonucleosides.

Authors:  Phillip J McCown; Agnieszka Ruszkowska; Charlotte N Kunkler; Kurtis Breger; Jacob P Hulewicz; Matthew C Wang; Noah A Springer; Jessica A Brown
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-04-16       Impact factor: 9.349

6.  Coevolution Theory of the Genetic Code at Age Forty: Pathway to Translation and Synthetic Life.

Authors:  J Tze-Fei Wong; Siu-Kin Ng; Wai-Kin Mat; Taobo Hu; Hong Xue
Journal:  Life (Basel)       Date:  2016-03-16

7.  The RNA-splicing endonuclease from the euryarchaeaon Methanopyrus kandleri is a heterotetramer with constrained substrate specificity.

Authors:  Ayano Kaneta; Kosuke Fujishima; Wataru Morikazu; Hiroyuki Hori; Akira Hirata
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

Review 8.  Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA.

Authors:  Hiroyuki Hori; Takuya Kawamura; Takako Awai; Anna Ochi; Ryota Yamagami; Chie Tomikawa; Akira Hirata
Journal:  Microorganisms       Date:  2018-10-20

Review 9.  The Processing, Gene Regulation, Biological Functions, and Clinical Relevance of N4-Acetylcytidine on RNA: A Systematic Review.

Authors:  Gehui Jin; Mingqing Xu; Mengsha Zou; Shiwei Duan
Journal:  Mol Ther Nucleic Acids       Date:  2020-02-08       Impact factor: 8.886

10.  Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea.

Authors:  Philippe Wolff; Claire Villette; Julie Zumsteg; Dimitri Heintz; Laura Antoine; Béatrice Chane-Woon-Ming; Louis Droogmans; Henri Grosjean; Eric Westhof
Journal:  RNA       Date:  2020-09-29       Impact factor: 4.942

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.