Literature DB >> 15905273

Dasty and UniProt DAS: a perfect pair for protein feature visualization.

Philip Jones1, Nisha Vinod, Thomas Down, Andre Hackmann, Andreas Kahari, Ernst Kretschmann, Antony Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler.   

Abstract

In this study, we present two freely available and complementary Distributed Annotation System (DAS) resources: a DAS reference server that provides up-to-date sequence and annotation from UniProt, with additional feature links and database cross-references from InterPro and a DAS client implemented using Java and Macromedia Flash that is optimized for the display of protein features.

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Year:  2005        PMID： 15905273     DOI： 10.1093/bioinformatics/bti506

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  14 in total

1.  aGEM: an integrative system for analyzing spatial-temporal gene-expression information.

Authors:  Natalia Jiménez-Lozano; Joan Segura; José Ramón Macías; Juanjo Vega; José María Carazo
Journal:  Bioinformatics       Date:  2009-07-09       Impact factor: 6.937

2.  UniProt Knowledgebase: a hub of integrated protein data.

Authors:  Michele Magrane
Journal:  Database (Oxford)       Date:  2011-03-29       Impact factor: 3.451

3.  Dasty3, a WEB framework for DAS.

Authors:  Jose M Villaveces; Rafael C Jimenez; Leyla J Garcia; Gustavo A Salazar; Bernat Gel; Nicola Mulder; Maria Martin; Alexander Garcia; Henning Hermjakob
Journal:  Bioinformatics       Date:  2011-07-28       Impact factor: 6.937

4.  Computational approaches to selecting and optimising targets for structural biology.

Authors:  Ian M Overton; Geoffrey J Barton
Journal:  Methods       Date:  2011-08-27       Impact factor: 3.608

5.  Ensembl 2006.

Authors:  E Birney; D Andrews; M Caccamo; Y Chen; L Clarke; G Coates; T Cox; F Cunningham; V Curwen; T Cutts; T Down; R Durbin; X M Fernandez-Suarez; P Flicek; S Gräf; M Hammond; J Herrero; K Howe; V Iyer; K Jekosch; A Kähäri; A Kasprzyk; D Keefe; F Kokocinski; E Kulesha; D London; I Longden; C Melsopp; P Meidl; B Overduin; A Parker; G Proctor; A Prlic; M Rae; D Rios; S Redmond; M Schuster; I Sealy; S Searle; J Severin; G Slater; D Smedley; J Smith; A Stabenau; J Stalker; S Trevanion; A Ureta-Vidal; J Vogel; S White; C Woodwark; T J P Hubbard
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

6.  PRIDE: a public repository of protein and peptide identifications for the proteomics community.

Authors:  Philip Jones; Richard G Côté; Lennart Martens; Antony F Quinn; Chris F Taylor; William Derache; Henning Hermjakob; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.

Authors:  Mauro Amico; Michele Finelli; Ivan Rossi; Andrea Zauli; Arne Elofsson; Håkan Viklund; Gunnar von Heijne; David Jones; Anders Krogh; Piero Fariselli; Pier Luigi Martelli; Rita Casadio
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

8.  Human Proteinpedia: a unified discovery resource for proteomics research.

Authors:  Kumaran Kandasamy; Shivakumar Keerthikumar; Renu Goel; Suresh Mathivanan; Nandini Patankar; Beema Shafreen; Santosh Renuse; Harsh Pawar; Y L Ramachandra; Pradip Kumar Acharya; Prathibha Ranganathan; Raghothama Chaerkady; T S Keshava Prasad; Akhilesh Pandey
Journal:  Nucleic Acids Res       Date:  2008-10-23       Impact factor: 16.971

9.  Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX.

Authors:  Alvaro Martínez Barrio; Erik Lagercrantz; Göran O Sperber; Jonas Blomberg; Erik Bongcam-Rudloff
Journal:  BMC Bioinformatics       Date:  2009-06-16       Impact factor: 3.169

10.  DASMI: exchanging, annotating and assessing molecular interaction data.

Authors:  Hagen Blankenburg; Robert D Finn; Andreas Prlić; Andrew M Jenkinson; Fidel Ramírez; Dorothea Emig; Sven-Eric Schelhorn; Joachim Büch; Thomas Lengauer; Mario Albrecht
Journal:  Bioinformatics       Date:  2009-05-15       Impact factor: 6.937
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