Literature DB >> 15904934

Evolutionary dynamics and highly optimized tolerance.

Tong Zhou1, J M Carlson, John Doyle.   

Abstract

We develop a numerical model of a lattice community based on Highly Optimized Tolerance (HOT), which relates the evolution of complexity to robustness tradeoffs in an uncertain environment. With the model, we explore scenarios for evolution and extinction which are abstractions of processes which are commonly discussed in biological and ecological case studies. These include the effects of different habitats on the phenotypic traits of the organisms, the effects of different mutation rates on adaptation, fitness, and diversity, and competition between generalists and specialists. The model exhibits a wide variety of microevolutionary and macroevolutionary phenomena which can arise in organisms which are subject to random mutation, and selection based on fitness evaluated in a specific environment. Generalists arise in uniform habitats, where different disturbances occur with equal frequency, while specialists arise when the relative frequency of different disturbances is skewed. Fast mutators are seen to play a primary role in adaptation, while slow mutators preserve well-adapted configurations. When uniform and skewed habitats are coupled through migration of the organisms, we observe a primitive form of punctuated equilibrium. Rare events in the skewed habitat lead to extinction of the specialists, whereupon generalists invade from the uniform habitat, adapt to their new surroundings, ultimately leading their progeny to become vulnerable to extinction in a subsequent rare disturbance.

Mesh:

Year:  2005        PMID: 15904934     DOI: 10.1016/j.jtbi.2005.03.023

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  7 in total

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Authors:  Dardo Tomasi; Gene-Jack Wang; Nora D Volkow
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

2.  Robustness and fragility in immunosenescence.

Authors:  Sean P Stromberg; Jean Carlson
Journal:  PLoS Comput Biol       Date:  2006-10-10       Impact factor: 4.475

3.  Physical foundations of biological complexity.

Authors:  Yuri I Wolf; Mikhail I Katsnelson; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-27       Impact factor: 11.205

4.  The scale-free dynamics of eukaryotic cells.

Authors:  Miguel A Aon; Marc R Roussel; Sonia Cortassa; Brian O'Rourke; Douglas B Murray; Manfred Beckmann; David Lloyd
Journal:  PLoS One       Date:  2008-11-04       Impact factor: 3.240

5.  Coevolutionary immune system dynamics driving pathogen speciation.

Authors:  Kimberly J Schlesinger; Sean P Stromberg; Jean M Carlson
Journal:  PLoS One       Date:  2014-07-23       Impact factor: 3.240

Review 6.  Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.

Authors:  Andrew Currin; Neil Swainston; Philip J Day; Douglas B Kell
Journal:  Chem Soc Rev       Date:  2015-03-07       Impact factor: 54.564

Review 7.  The Danaid Theory of Aging.

Authors:  Maarten J Wensink; Alan A Cohen
Journal:  Front Cell Dev Biol       Date:  2022-01-03
  7 in total

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