Literature DB >> 15901333

Maximum entropy deconvolution of infrared spectra: use of a novel entropy expression without sign restriction.

Víctor A Lórenz-Fonfría1, Esteve Padrós.   

Abstract

Absorbance and difference infrared spectra are often acquired aiming to characterize protein structure and structural changes of proteins upon ligand binding, as well as for many other chemical and biochemical studies. Their analysis requires as a first step the identification of the component bands (number, position, and area) and as a second step their assignment. The first step of the analysis is challenged by the habitually strong band overlap in infrared spectra. Therefore, it is useful to make use of a mathematical method able to narrow the component bands to the extent to eliminate, or at least reduce, the band overlap. Additionally, to be of general applicability this method should permit negative values for the solution. We present a maximum entropy deconvolution approach for the band-narrowing of absorbance and difference spectra showing the required characteristics, which uses the generalized negative Burg-entropy (Itakura-Saito discrepancy) generalized for difference spectra. We present results on synthetic noisy absorbance and difference spectra, as well as on experimental infrared spectra from the membrane protein bacteriorhodopsin.

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Year:  2005        PMID: 15901333     DOI: 10.1366/0003702053641504

Source DB:  PubMed          Journal:  Appl Spectrosc        ISSN: 0003-7028            Impact factor:   2.388


  4 in total

1.  Alteration of sugar-induced conformational changes of the melibiose permease by mutating Arg141 in loop 4-5.

Authors:  Xavier León; Gérard Leblanc; Esteve Padrós
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

2.  Changes in secondary structures and acidic side chains of melibiose permease upon cosubstrates binding.

Authors:  Xavier León; Raymonde Lemonnier; Gérard Leblanc; Esteve Padrós
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

3.  Modulation of Candida albicans Biofilm by Different Carbon Sources.

Authors:  Suma C Pemmaraju; Parul A Pruthi; R Prasad; Vikas Pruthi
Journal:  Mycopathologia       Date:  2016-02-22       Impact factor: 2.574

4.  High spectral specificity of local chemical components characterization with multichannel shift-excitation Raman spectroscopy.

Authors:  Kun Chen; Tao Wu; Haoyun Wei; Xuejian Wu; Yan Li
Journal:  Sci Rep       Date:  2015-09-09       Impact factor: 4.379

  4 in total

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