Literature DB >> 15899400

Fluorescence in situ hybridisation (FISH)--the next generation.

Katrin Zwirglmaier1.   

Abstract

Fluorescence in situ hybridisation (FISH) has become one of the major techniques in environmental microbiology. The original version of this technique often suffered from limited sensitivity due to low target copy number or target inaccessibility. In recent years there have been several developments to amend this problem by increasing signal intensity. This review summarises various approaches for signal amplification, focussing especially on two widely recognised varieties, tyramide signal amplification and multiply labelled polynucleotide probes. Furthermore, new applications for FISH are discussed, which arise from the increased sensitivity of the method.

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Year:  2005        PMID: 15899400     DOI: 10.1016/j.femsle.2005.04.015

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  19 in total

1.  Microbial dynamics in a sequencing batch reactor treating alkaline peroxide mechanical pulp and paper process wastewater.

Authors:  Peng Zhan; Jienan Chen; Gang He; Guigan Fang; Yingqiao Shi
Journal:  Environ Sci Pollut Res Int       Date:  2010-06-12       Impact factor: 4.223

Review 2.  Selected fluorescent techniques for identification of the physiological state of individual water and soil bacterial cells - review.

Authors:  S Lew; M Lew; T Mieszczyński; J Szarek
Journal:  Folia Microbiol (Praha)       Date:  2010-05-19       Impact factor: 2.099

3.  Semiautomated multiplexed quantum dot-based in situ hybridization and spectral deconvolution.

Authors:  Richard J Byers; Dolores Di Vizio; Fionnuala O'connell; Eleni Tholouli; Richard M Levenson; Kirk Gossage; Kirk Gossard; David Twomey; Yu Yang; Elisa Benedettini; Joshua Rose; Keith L Ligon; Stephen P Finn; Todd R Golub; Massimo Loda
Journal:  J Mol Diagn       Date:  2007-02       Impact factor: 5.568

4.  Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization.

Authors:  Irina Smolina; Charles Lee; Maxim Frank-Kamenetskii
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

5.  Responses of benthic bacteria to experimental drying in sediments from Mediterranean temporary rivers.

Authors:  Stefano Amalfitano; Stefano Fazi; Annamaria Zoppini; Anna Barra Caracciolo; Paola Grenni; Alberto Puddu
Journal:  Microb Ecol       Date:  2007-06-30       Impact factor: 4.552

6.  Application of recognition of individual genes-fluorescence in situ hybridization (RING-FISH) to detect nitrite reductase genes (nirK) of denitrifiers in pure cultures and environmental samples.

Authors:  Jennifer Pratscher; Catrin Stichternoth; Katrin Fichtl; Karl-Heinz Schleifer; Gesche Braker
Journal:  Appl Environ Microbiol       Date:  2008-12-12       Impact factor: 4.792

7.  PNA-based microbial pathogen identification and resistance marker detection: An accurate, isothermal rapid assay based on genome-specific features.

Authors:  Irina Smolina; Nancy S Miller; Maxim D Frank-Kamenetskii
Journal:  Artif DNA PNA XNA       Date:  2010-10

8.  Linking metabolite production to taxonomic identity in environmental samples by (MA)LDI-FISH.

Authors:  Martin Kaltenpoth; Kerstin Strupat; Aleš Svatoš
Journal:  ISME J       Date:  2015-07-14       Impact factor: 10.302

Review 9.  Biosurfactants during in situ bioremediation: factors that influence the production and challenges in evalution.

Authors:  Andressa Decesaro; Thaís Strieder Machado; Ângela Carolina Cappellaro; Christian Oliveira Reinehr; Antônio Thomé; Luciane Maria Colla
Journal:  Environ Sci Pollut Res Int       Date:  2017-08-16       Impact factor: 4.223

10.  Targeting species-specific low-affinity 16S rRNA binding sites by using peptide nucleic acids for detection of Legionellae in biofilms.

Authors:  Sandra A Wilks; C William Keevil
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

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