Literature DB >> 15898749

Power-law solvation dynamics in DNA over six decades in time.

Daniele Andreatta1, J Louis Pérez Lustres, Sergey A Kovalenko, Nikolaus P Ernsting, Catherine J Murphy, Robert S Coleman, Mark A Berg.   

Abstract

Time-resolved Stokes shifts in a dye-containing oligonucleotide have been observed over the entire time range from 40 fs to 40 ns. The dynamics fit to a power law with a small exponent of 0.15. Similar relaxation has been seen in proteins but has not been anticipated in DNA. Distinct relaxation components due to specific subcomponents of the system, bulk water, bound water, counterions, backbone, bases, and so on, are not found. The various subcomponents may be so strongly coupled that their motions cannot be treated separately.

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Year:  2005        PMID: 15898749     DOI: 10.1021/ja044177v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Hydration changes accompanying the binding of minor groove ligands with DNA.

Authors:  Natalya N Degtyareva; Bret D Wallace; Andrea R Bryant; Kristine M Loo; Jeffrey T Petty
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

2.  Hydration changes in the association of Hoechst 33258 with DNA.

Authors:  John R Kiser; Richard W Monk; Rondey L Smalls; Jeffrey T Petty
Journal:  Biochemistry       Date:  2005-12-27       Impact factor: 3.162

3.  Evaluation of elastic properties of atomistic DNA models.

Authors:  Alexey K Mazur
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

Review 4.  Fluorescent analogs of biomolecular building blocks: design, properties, and applications.

Authors:  Renatus W Sinkeldam; Nicholas J Greco; Yitzhak Tor
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

Review 5.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

6.  Effect of protein binding on ultrafast DNA dynamics: characterization of a DNA:APE1 complex.

Authors:  Sobhan Sen; Nicole A Paraggio; Latha A Gearheart; Ellen E Connor; Ala Issa; Robert S Coleman; David M Wilson; Michael D Wyatt; Mark A Berg
Journal:  Biophys J       Date:  2005-09-30       Impact factor: 4.033

7.  Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC).

Authors:  Rodrigo Galindo-Murillo; Daniel R Roe; Thomas E Cheatham
Journal:  Biochim Biophys Acta       Date:  2014-09-16

8.  Furan Decorated Nucleoside Analogues as Fluorescent Probes: synthesis, photophysical evaluation and site-specific incorporation.

Authors:  Nicholas J Greco; Yitzhak Tor
Journal:  Tetrahedron       Date:  2007-04-23       Impact factor: 2.457

Review 9.  Dynamics of water and ions around DNA: What is so special about them?

Authors:  Him Shweta; Sobhan Sen
Journal:  J Biosci       Date:  2018-07       Impact factor: 1.826

Review 10.  Ultrafast dynamics-driven biomolecular recognition where fast activities dictate slow events.

Authors:  Priya Singh; Damayanti Bagchi; Samir Kumar Pal
Journal:  J Biosci       Date:  2018-07       Impact factor: 1.826

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