Literature DB >> 15895079

Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms.

Naama M Kopelman1, Doron Lancet, Itai Yanai.   

Abstract

Gene duplication and alternative splicing are distinct evolutionary mechanisms that provide the raw material for new biological functions. We explored their relationships in human and mouse and found an inverse correlation between the size of a gene's family and its use of alternatively spliced isoforms. A cross-organism analysis suggests that selection for genome-wide genic proliferation might be interchangeably met by either evolutionary mechanism.

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Year:  2005        PMID: 15895079     DOI: 10.1038/ng1575

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  71 in total

1.  Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication.

Authors:  Julien Roux; Marc Robinson-Rechavi
Journal:  Genome Res       Date:  2010-12-20       Impact factor: 9.043

2.  Global dissection of alternative splicing in paleopolyploid soybean.

Authors:  Yanting Shen; Zhengkui Zhou; Zheng Wang; Weiyu Li; Chao Fang; Mian Wu; Yanming Ma; Tengfei Liu; Ling-An Kong; De-Liang Peng; Zhixi Tian
Journal:  Plant Cell       Date:  2014-03-28       Impact factor: 11.277

3.  Alternative splicing, gene duplication and connectivity in the genetic interaction network of the nematode worm Caenorhabditis elegans.

Authors:  Austin L Hughes; Robert Friedman
Journal:  Genetica       Date:  2007-11-18       Impact factor: 1.082

4.  Anciently duplicated Broad Complex exons have distinct temporal functions during tissue morphogenesis.

Authors:  Rebecca F Spokony; Linda L Restifo
Journal:  Dev Genes Evol       Date:  2007-05-26       Impact factor: 0.900

5.  The evolution of novelty in conserved genes; evidence of positive selection in the Drosophila fruitless gene is localised to alternatively spliced exons.

Authors:  D J Parker; A Gardiner; M C Neville; M G Ritchie; S F Goodwin
Journal:  Heredity (Edinb)       Date:  2013-10-23       Impact factor: 3.821

Review 6.  Improvisation in evolution of genes and genomes: whose structure is it anyway?

Authors:  Boris E Shakhnovich; Eugene I Shakhnovich
Journal:  Curr Opin Struct Biol       Date:  2008-05-17       Impact factor: 6.809

7.  Selection on length mutations after frameshift can explain the origin and retention of the AP3/DEF-like paralogues in Impatiens.

Authors:  Steven B Janssens; Tom Viaene; Suzy Huysmans; Erik F Smets; Koen P Geuten
Journal:  J Mol Evol       Date:  2008-04-08       Impact factor: 2.395

Review 8.  The current excitement about copy-number variation: how it relates to gene duplications and protein families.

Authors:  Jan O Korbel; Philip M Kim; Xueying Chen; Alexander Eckehart Urban; Sherman Weissman; Michael Snyder; Mark B Gerstein
Journal:  Curr Opin Struct Biol       Date:  2008-05-27       Impact factor: 6.809

9.  The evolution of alternative splicing in the Pax family: the view from the Basal chordate amphioxus.

Authors:  Stephen Short; Linda Z Holland
Journal:  J Mol Evol       Date:  2008-05-14       Impact factor: 2.395

10.  Functional diversification of sea urchin ABCC1 (MRP1) by alternative splicing.

Authors:  Tufan Gökirmak; Joseph P Campanale; Adam M Reitzel; Lauren E Shipp; Gary W Moy; Amro Hamdoun
Journal:  Am J Physiol Cell Physiol       Date:  2016-04-06       Impact factor: 4.249

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