Literature DB >> 15892707

Modelling viral impact on bacterioplankton in the North Sea using artificial neural networks.

Christian Winter1, Arjan Smit, Timea Szoeke-Dénes, Gerhard J Herndl, Markus G Weinbauer.   

Abstract

The temporal variability of the viral impact on bacterioplankton during the summer-winter transition in the North Sea was determined and artificial neural networks (ANNs) were developed to predict viral production and the frequency of infected bacterial cells (FIC). Viral production and FIC were estimated using a virus-dilution approach during four cruises in the southern North Sea between July and December 2000 and an additional cruise in June 2001. Supplementary data such as bacterial production, and bacterial and viral abundance were collected to relate changes in FIC and viral production to the dynamics of other biotic parameters. Average viral abundance varied between 4.4 x 10(6) ml(-1) in December and 29.8 x 10(6) ml(-1) in July. Over the seasonal cycle, viral abundance correlated best with bacterial production. Average bacterial abundance varied between 0.5 x 10(6) ml(-1) in December and 1.3 x 10(6) ml(-1) in July. Monthly average values of FIC ranged from 9% in September to 39% in June and the average viral production from 11 x 10(4) ml(-1) h(-1) in December to 35 x 10(4) ml(-1) h(-1) in July. The data set was used to develop ANN-based models of viral production and FIC. Viral production was modelled best using sampling time, and bacterial and viral abundance as input parameters to an ANN with two hidden neurons. Modelling of FIC was performed using bacterial production as an additional input parameter for an ANN with three hidden neurons. The models can be used to simulate viral production and FIC based on regularly recorded and easily obtainable parameters such as bacterial production, bacterial and viral abundance.

Mesh:

Year:  2005        PMID: 15892707     DOI: 10.1111/j.1462-2920.2005.00768.x

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  10 in total

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Authors:  Lucia Bongiorni; Mirko Magagnini; Monica Armeni; Rachel Noble; Roberto Danovaro
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

2.  Longitudinal changes in the bacterial community composition of the Danube River: a whole-river approach.

Authors:  Christian Winter; Thomas Hein; Gerhard Kavka; Robert L Mach; Andreas H Farnleitner
Journal:  Appl Environ Microbiol       Date:  2006-11-03       Impact factor: 4.792

3.  Viral abundance, decay, and diversity in the meso- and bathypelagic waters of the north atlantic.

Authors:  Verónica Parada; Eva Sintes; Hendrik M van Aken; Markus G Weinbauer; Gerhard J Herndl
Journal:  Appl Environ Microbiol       Date:  2007-05-11       Impact factor: 4.792

4.  Spatial and temporal distribution of the vibrionaceae in coastal waters of Hawaii, Australia, and France.

Authors:  B W Jones; A Maruyama; C C Ouverney; M K Nishiguchi
Journal:  Microb Ecol       Date:  2007-03-08       Impact factor: 4.552

5.  Viral ecology of organic and inorganic particles in aquatic systems: avenues for further research.

Authors:  M G Weinbauer; Y Bettarel; R Cattaneo; B Luef; C Maier; C Motegi; P Peduzzi; X Mari
Journal:  Aquat Microb Ecol       Date:  2009-11-24       Impact factor: 1.759

6.  Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect.

Authors:  Daniele De Corte; Eva Sintes; Taichi Yokokawa; Thomas Reinthaler; Gerhard J Herndl
Journal:  ISME J       Date:  2012-01-19       Impact factor: 10.302

7.  Mixing alters the lytic activity of viruses in the dark ocean.

Authors:  Christian Winter; Nicole Köstner; Carl-Philip Kruspe; Damaris Urban; Simone Muck; Thomas Reinthaler; Gerhard J Herndl
Journal:  Ecology       Date:  2018-02-06       Impact factor: 5.499

8.  Assessment of Explicit Representation of Dynamic Viral Processes in Regional Marine Ecological Models.

Authors:  Le Xie; Rui Zhang; Ya-Wei Luo
Journal:  Viruses       Date:  2022-06-30       Impact factor: 5.818

9.  Modeling the winter-to-summer transition of prokaryotic and viral abundance in the Arctic Ocean.

Authors:  Christian Winter; Jérôme P Payet; Curtis A Suttle
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

10.  Large-scale distribution of microbial and viral populations in the South Atlantic Ocean.

Authors:  Daniele De Corte; Eva Sintes; Taichi Yokokawa; Itziar Lekunberri; Gerhard J Herndl
Journal:  Environ Microbiol Rep       Date:  2016-02-16       Impact factor: 3.541

  10 in total

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