Literature DB >> 15889793

[A method for the preparation of normalized cDNA libraries enriched with full-length sequences].

P A Zhulidov, E A Bogdanova, A S Shcheglov, I A Shagina, L L Vagner, G L Khazpekov, V V Kozhemiako, S A Luk'ianov, D A Shagin.   

Abstract

We developed a new method for the preparation of normalized cDNA libraries enriched with full-length sequences. It is based on the properties of the recently characterized duplex-specific nuclease from the hepatopancreas of the Kamchatka crab. The duplex-specific nuclease is thermostable, it effectively cleaves double-stranded DNA and is inactive toward single-stranded DNA (Shagin et al., Genome Res., 2002, vol. 12, pp. 1935-1942). Our method enables the normalization of cDNA samples enriched with full-length sequences without use of laborious and ineffective stages of physical separation. The efficiency of the method was demonstrated in model experiments using cDNA samples from several human tissues.

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Year:  2005        PMID: 15889793     DOI: 10.1007/s11171-005-0023-7

Source DB:  PubMed          Journal:  Bioorg Khim        ISSN: 0132-3423


  17 in total

1.  DSN depletion is a simple method to remove selected transcripts from cDNA populations.

Authors:  Ekaterina A Bogdanova; Irina A Shagina; Elena Mudrik; Igor Ivanov; Peter Amon; Laura L Vagner; Sergey A Lukyanov; Dmitry A Shagin
Journal:  Mol Biotechnol       Date:  2009-01-06       Impact factor: 2.695

2.  Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization.

Authors:  Rhonda Bacher; Li-Fang Chu; Cara Argus; Jennifer M Bolin; Parker Knight; James A Thomson; Ron Stewart; Christina Kendziorski
Journal:  Nucleic Acids Res       Date:  2022-01-25       Impact factor: 16.971

3.  Efficient recovery of whole blood RNA--a comparison of commercial RNA extraction protocols for high-throughput applications in wildlife species.

Authors:  Doreen Schwochow; Laurel E K Serieys; Robert K Wayne; Olaf Thalmann
Journal:  BMC Biotechnol       Date:  2012-06-27       Impact factor: 2.563

4.  High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus.

Authors:  Raul Bettencourt; Miguel Pinheiro; Conceição Egas; Paula Gomes; Mafalda Afonso; Timothy Shank; Ricardo Serrão Santos
Journal:  BMC Genomics       Date:  2010-10-11       Impact factor: 3.969

5.  Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life.

Authors:  A Faddeeva; R A Studer; K Kraaijeveld; D Sie; B Ylstra; J Mariën; H J M op den Camp; E Datema; J T den Dunnen; N M van Straalen; D Roelofs
Journal:  PLoS One       Date:  2015-06-15       Impact factor: 3.240

6.  Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery.

Authors:  Matthew C Hale; Cory R McCormick; James R Jackson; J Andrew Dewoody
Journal:  BMC Genomics       Date:  2009-04-29       Impact factor: 3.969

7.  A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.

Authors:  M Carmen Marques; Hugo Alonso-Cantabrana; Javier Forment; Raquel Arribas; Santiago Alamar; Vicente Conejero; Miguel A Perez-Amador
Journal:  BMC Genomics       Date:  2009-09-11       Impact factor: 3.969

8.  A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation.

Authors:  Glenn T Howe; Jianbin Yu; Brian Knaus; Richard Cronn; Scott Kolpak; Peter Dolan; W Walter Lorenz; Jeffrey F D Dean
Journal:  BMC Genomics       Date:  2013-02-28       Impact factor: 3.969

9.  Selection strategy and the design of hybrid oligonucleotide primers for RACE-PCR: cloning a family of toxin-like sequences from Agelena orientalis.

Authors:  Zhensheng Pan; Richard Barry; Alexey Lipkin; Mikhail Soloviev
Journal:  BMC Mol Biol       Date:  2007-05-11       Impact factor: 2.946

10.  Isolation, characterization and molecular cloning of duplex-specific nuclease from the hepatopancreas of the Kamchatka crab.

Authors:  Veronika E Anisimova; Denis V Rebrikov; Dmitry A Shagin; Valery B Kozhemyako; Natalia I Menzorova; Dmitry B Staroverov; Rustam Ziganshin; Laura L Vagner; Valery A Rasskazov; Sergey A Lukyanov; Alex S Shcheglov
Journal:  BMC Biochem       Date:  2008-05-21       Impact factor: 4.059

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