Literature DB >> 15888678

The maize genetics and genomics database. The community resource for access to diverse maize data.

Carolyn J Lawrence1, Trent E Seigfried, Volker Brendel.   

Abstract

The Maize Genetics and Genomics Database (MaizeGDB) serves the maize (Zea mays) research community by making a wealth of genetics and genomics data available through an intuitive Web-based interface. The goals of the MaizeGDB project are 3-fold: to provide a central repository for public maize information; to present the data through the MaizeGDB Web site in a way that recapitulates biological relationships; and to provide an array of computational tools that address biological questions in an easy-to-use manner at the site. In addition to these primary tasks, MaizeGDB team members also serve the community of maize geneticists by lending technical support for community activities, including the annual Maize Genetics Conference and various workshops, teaching researchers to use both the MaizeGDB Web site and Community Curation Tools, and engaging in collaboration with individual research groups to make their unique data types available through MaizeGDB.

Entities:  

Mesh:

Year:  2005        PMID: 15888678      PMCID: PMC1104160          DOI: 10.1104/pp.104.059196

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  9 in total

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2.  PlantGDB, plant genome database and analysis tools.

Authors:  Qunfeng Dong; Shannon D Schlueter; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Maintaining collections of mutants for plant functional genomics.

Authors:  Randy Scholl; Martin M Sachs; Doreen Ware
Journal:  Methods Mol Biol       Date:  2003

Review 4.  Gramene, a tool for grass genomics.

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Journal:  Plant Physiol       Date:  2002-12       Impact factor: 8.340

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

6.  MaizeGDB, the community database for maize genetics and genomics.

Authors:  Carolyn J Lawrence; Qunfeng Dong; Mary L Polacco; Trent E Seigfried; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

7.  Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Authors:  Volker Brendel; Liqun Xing; Wei Zhu
Journal:  Bioinformatics       Date:  2004-02-05       Impact factor: 6.937

8.  A new single-locus cytogenetic mapping system for maize (Zea mays L.): overcoming FISH detection limits with marker-selected sorghum (S. propinquum L.) BAC clones.

Authors:  George L Koumbaris; Hank W Bass
Journal:  Plant J       Date:  2003-09       Impact factor: 6.417

9.  The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community.

Authors:  Seung Yon Rhee; William Beavis; Tanya Z Berardini; Guanghong Chen; David Dixon; Aisling Doyle; Margarita Garcia-Hernandez; Eva Huala; Gabriel Lander; Mary Montoya; Neil Miller; Lukas A Mueller; Suparna Mundodi; Leonore Reiser; Julie Tacklind; Dan C Weems; Yihe Wu; Iris Xu; Daniel Yoo; Jungwon Yoon; Peifen Zhang
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

  9 in total
  23 in total

1.  Biological databases for plant research.

Authors:  Seung Yon Rhee; Bill Crosby
Journal:  Plant Physiol       Date:  2005-05       Impact factor: 8.340

2.  Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock Translator.

Authors:  Carolyn J Lawrence; Trent E Seigfried; Hank W Bass; Lorinda K Anderson
Journal:  Genetics       Date:  2005-12-30       Impact factor: 4.562

3.  Precise mapping of quantitative trait loci for resistance to southern leaf blight, caused by Cochliobolus heterostrophus race O, and flowering time using advanced intercross maize lines.

Authors:  P J Balint-Kurti; J C Zwonitzer; R J Wisser; M L Carson; M A Oropeza-Rosas; J B Holland; S J Szalma
Journal:  Genetics       Date:  2007-03-04       Impact factor: 4.562

4.  Fine quantitative trait loci mapping of carbon and nitrogen metabolism enzyme activities and seedling biomass in the maize IBM mapping population.

Authors:  Nengyi Zhang; Yves Gibon; Amit Gur; Charles Chen; Nicholas Lepak; Melanie Höhne; Zhiwu Zhang; Dallas Kroon; Hendrik Tschoep; Mark Stitt; Edward Buckler
Journal:  Plant Physiol       Date:  2010-10-22       Impact factor: 8.340

5.  A major locus expressed in the male gametophyte with incomplete penetrance is responsible for in situ gynogenesis in maize.

Authors:  P Barret; M Brinkmann; M Beckert
Journal:  Theor Appl Genet       Date:  2008-05-31       Impact factor: 5.699

6.  TNAURice: Database on rice varieties released from Tamil Nadu Agricultural University.

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7.  The Genetic Basis of Haploid Induction in Maize Identified with a Novel Genome-Wide Association Method.

Authors:  Haixiao Hu; Tobias A Schrag; Regina Peis; Sandra Unterseer; Wolfgang Schipprack; Shaojiang Chen; Jinsheng Lai; Jianbing Yan; Boddupalli M Prasanna; Sudha K Nair; Vijay Chaikam; Valeriu Rotarenco; Olga A Shatskaya; Alexandra Zavalishina; Stefan Scholten; Chris-Carolin Schön; Albrecht E Melchinger
Journal:  Genetics       Date:  2016-02-19       Impact factor: 4.562

8.  Whole-plant growth stage ontology for angiosperms and its application in plant biology.

Authors:  Anuradha Pujar; Pankaj Jaiswal; Elizabeth A Kellogg; Katica Ilic; Leszek Vincent; Shulamit Avraham; Peter Stevens; Felipe Zapata; Leonore Reiser; Seung Y Rhee; Martin M Sachs; Mary Schaeffer; Lincoln Stein; Doreen Ware; Susan McCouch
Journal:  Plant Physiol       Date:  2006-08-11       Impact factor: 8.340

9.  A flexible quantitative methodology for the analysis of gene-flow between conventionally bred maize populations using microsatellite markers.

Authors:  P R H Robson; R Kelly; E F Jensen; G D Giddings; M Leitch; C Davey; A P Gay; G Jenkins; H Thomas; I S Donnison
Journal:  Theor Appl Genet       Date:  2010-11-26       Impact factor: 5.699

10.  Genetic and physiological analysis of iron biofortification in maize kernels.

Authors:  Mercy G Lung'aho; Angela M Mwaniki; Stephen J Szalma; Jonathan J Hart; Michael A Rutzke; Leon V Kochian; Raymond P Glahn; Owen A Hoekenga
Journal:  PLoS One       Date:  2011-06-08       Impact factor: 3.240

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