Literature DB >> 15886695

Microbial community genomics in the ocean.

Edward F DeLong1.   

Abstract

Marine microbial communities were among the first microbial communities to be studied using cultivation-independent genomic approaches. Ocean-going genomic studies are now providing a more comprehensive description of the organisms and processes that shape microbial community structure, function and dynamics in the sea. Through the lens of microbial community genomics, a more comprehensive view of uncultivated microbial species, gene and biochemical pathway distributions, and naturally occurring genomic variability is being brought into sharper focus. Besides providing new perspectives on oceanic microbial communities, these new studies are now poised to reveal the fundamental principles that drive microbial ecological and evolutionary processes.

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Year:  2005        PMID: 15886695     DOI: 10.1038/nrmicro1158

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  84 in total

1.  Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis.

Authors:  Thomas Danhorn; Curtis R Young; Edward F DeLong
Journal:  ISME J       Date:  2012-04-26       Impact factor: 10.302

2.  Environments shape the nucleotide composition of genomes.

Authors:  Konrad U Foerstner; Christian von Mering; Sean D Hooper; Peer Bork
Journal:  EMBO Rep       Date:  2005-12       Impact factor: 8.807

3.  MEGAN analysis of metagenomic data.

Authors:  Daniel H Huson; Alexander F Auch; Ji Qi; Stephan C Schuster
Journal:  Genome Res       Date:  2007-01-25       Impact factor: 9.043

Review 4.  Sponge-associated microorganisms: evolution, ecology, and biotechnological potential.

Authors:  Michael W Taylor; Regina Radax; Doris Steger; Michael Wagner
Journal:  Microbiol Mol Biol Rev       Date:  2007-06       Impact factor: 11.056

5.  Ecological genomics of marine Roseobacters.

Authors:  M A Moran; R Belas; M A Schell; J M González; F Sun; S Sun; B J Binder; J Edmonds; W Ye; B Orcutt; E C Howard; C Meile; W Palefsky; A Goesmann; Q Ren; I Paulsen; L E Ulrich; L S Thompson; E Saunders; A Buchan
Journal:  Appl Environ Microbiol       Date:  2007-05-25       Impact factor: 4.792

6.  Metagenomics: read length matters.

Authors:  K Eric Wommack; Jaysheel Bhavsar; Jacques Ravel
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

Review 7.  A bioinformatician's guide to metagenomics.

Authors:  Victor Kunin; Alex Copeland; Alla Lapidus; Konstantinos Mavromatis; Philip Hugenholtz
Journal:  Microbiol Mol Biol Rev       Date:  2008-12       Impact factor: 11.056

Review 8.  Systems biology: Functional analysis of natural microbial consortia using community proteomics.

Authors:  Nathan C VerBerkmoes; Vincent J Denef; Robert L Hettich; Jillian F Banfield
Journal:  Nat Rev Microbiol       Date:  2009-03       Impact factor: 60.633

9.  Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome.

Authors:  Erin J Biers; Shulei Sun; Erinn C Howard
Journal:  Appl Environ Microbiol       Date:  2009-02-06       Impact factor: 4.792

Review 10.  Cell surface structures of archaea.

Authors:  Sandy Y M Ng; Behnam Zolghadr; Arnold J M Driessen; Sonja-Verena Albers; Ken F Jarrell
Journal:  J Bacteriol       Date:  2008-07-11       Impact factor: 3.490

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