Literature DB >> 15882056

Aromatic ring cleavage by homoprotocatechuate 2,3-dioxygenase: role of His200 in the kinetics of interconversion of reaction cycle intermediates.

Stephanie L Groce1, John D Lipscomb.   

Abstract

Homoprotocatechuate 2,3-dioxygenase (WT 2,3-HPCD) isolated from Brevibacterium fuscum utilizes an active site Fe(II) and O(2) to catalyze proximal extradiol cleavage of the aromatic ring of the substrate (HPCA). Here, the conserved active site residue His200 is changed to Gln, Glu, Ala, Asn, and Phe, and the reactions of the mutant enzymes are probed using steady-state and transient kinetic techniques. Each mutant catalyzes ring cleavage of HPCA to yield the normal product. H200Q and H200N retain 30-40% of the WT 2,3-HPCD activity at 24 degrees C, but the other mutants reduce the k(cat) to less than 9% of normal. The origin of the reduced activity is unlikely to be the substrate binding phase of the catalytic cycle, because the multistep anaerobic binding reaction of the chromophoric substrate 4-nitrocatechol (4NC) is shown to proceed with rate constants similar to those observed for WT 2,3-HPCD. In contrast, the rate constants of several steps in the multistep O(2) binding/insertion and product release half of the reaction cycle are substantially slowed, in particular the steps in which activated oxygen attacks the organic substrate and in which product is released. In the case of the H200N mutant, the product of 4NC oxidation is not the usual ring cleavage product, but rather the 4NC quinone. These results suggest that the main role of His200 is in facilitating the steps in the second half of the reaction cycle. The decreased rate constants for the O(2) insertion steps in the catalytic cycles of the mutant enzymes allow the oxygen adduct of an extradiol dioxygenase to be detected for the first time.

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Year:  2005        PMID: 15882056     DOI: 10.1021/bi050180v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

Review 1.  Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.

Authors:  Yifan Wang; Jiasong Li; Aimin Liu
Journal:  J Biol Inorg Chem       Date:  2017-01-13       Impact factor: 3.358

2.  Theoretical study of the catalytic reaction mechanism of MndD.

Authors:  Valentin Georgiev; Tomasz Borowski; Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2006-04-25       Impact factor: 3.358

Review 3.  Finding intermediates in the O2 activation pathways of non-heme iron oxygenases.

Authors:  E G Kovaleva; M B Neibergall; S Chakrabarty; J D Lipscomb
Journal:  Acc Chem Res       Date:  2007-06-14       Impact factor: 22.384

4.  Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: facile electron transfer between substrates.

Authors:  Michael M Mbughuni; Mrinmoy Chakrabarti; Joshua A Hayden; Katlyn K Meier; Joseph J Dalluge; Michael P Hendrich; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

5.  Determination of the active site of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone dioxygenase (PcpA).

Authors:  Timothy E Machonkin; Patrick L Holland; Kristine N Smith; Justin S Liberman; Adriana Dinescu; Thomas R Cundari; Sara S Rocks
Journal:  J Biol Inorg Chem       Date:  2010-03       Impact factor: 3.358

6.  A comparison of the reaction mechanisms of iron- and manganese-containing 2,3-HPCD: an important spin transition for manganese.

Authors:  Valentin Georgiev; Tomasz Borowski; Margareta R A Blomberg; Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2008-05-06       Impact factor: 3.358

7.  Kinetic and CD/MCD spectroscopic studies of the atypical, three-His-ligated, non-heme Fe2+ center in diketone dioxygenase: the role of hydrophilic outer shell residues in catalysis.

Authors:  Grit D Straganz; Adrienne R Diebold; Sigrid Egger; Bernd Nidetzky; Edward I Solomon
Journal:  Biochemistry       Date:  2010-02-09       Impact factor: 3.162

8.  Substrate-mediated oxygen activation by homoprotocatechuate 2,3-dioxygenase: intermediates formed by a tyrosine 257 variant.

Authors:  Michael M Mbughuni; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2012-10-29       Impact factor: 3.162

9.  Structural basis for the role of tyrosine 257 of homoprotocatechuate 2,3-dioxygenase in substrate and oxygen activation.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Biochemistry       Date:  2012-10-29       Impact factor: 3.162

10.  Intermediate in the O-O bond cleavage reaction of an extradiol dioxygenase.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

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