Literature DB >> 15879450

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data.

Mark A van de Wiel1, Serge J Smeets, Ruud H Brakenhoff, Bauke Ylstra.   

Abstract

We compute P-values, based on the Wilcoxon test with ties, to compare two conditions with array comparative genomic hybridization data, and we provide a simple interface to export and plot these P-values.

Mesh：

Year:  2005        PMID： 15879450     DOI： 10.1093/bioinformatics/bti489

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  16 in total

1.  Losses of chromosome 5q and 14q are associated with favorable clinical outcome of patients with gastric cancer.

Authors:  Tineke E Buffart; Beatriz Carvalho; Nicole C T van Grieken; Wessel N van Wieringen; Marianne Tijssen; Elma Meershoek-Klein Kranenbarg; Henk M W Verheul; Heike I Grabsch; Bauke Ylstra; Cornelis J H van de Velde; Gerrit A Meijer
Journal:  Oncologist       Date:  2012-04-24

2.  Intracystic papillary carcinoma of breast: interrelationship with in situ and invasive carcinoma and a proposal of pathogenesis: array comparative genomic hybridization study of 14 cases.

Authors:  Thaer Khoury; Qiang Hu; Song Liu; Jianmin Wang
Journal:  Mod Pathol       Date:  2013-08-02       Impact factor: 7.842

3.  Allelic loss of 9p21.3 is a prognostic factor in 1p/19q codeleted anaplastic gliomas.

Authors:  Agustí Alentorn; Caroline Dehais; François Ducray; Catherine Carpentier; Karima Mokhtari; Dominique Figarella-Branger; Olivier Chinot; Elisabeth Cohen-Moyal; Carole Ramirez; Hugues Loiseau; Selma Elouahdani-Hamdi; Patrick Beauchesne; Olivier Langlois; Christine Desenclos; Jean-Sébastien Guillamo; Phong Dam-Hieu; François Ghiringhelli; Philippe Colin; Joel Godard; Fabrice Parker; Frédéric Dhermain; Antoine F Carpentier; Jean-Sebastien Frenel; Philippe Menei; Luc Bauchet; Thierry Faillot; Mélanie Fesneau; Denys Fontaine; Marie-Jeannette Motuo-Fotso; Elodie Vauleon; Claude Gaultier; Caroline Le Guerinel; Edouard-Marcel Gueye; Georges Noel; Nicolas Desse; Xavier Durando; Eduardo Barrascout; Michel Wager; Damien Ricard; Ioana Carpiuc; Jean-Yves Delattre; Ahmed Idbaih
Journal:  Neurology       Date:  2015-09-18       Impact factor: 9.910

4.  CGHpower: exploring sample size calculations for chromosomal copy number experiments.

Authors:  Ilari Scheinin; José A Ferreira; Sakari Knuutila; Gerrit A Meijer; Mark A van de Wiel; Bauke Ylstra
Journal:  BMC Bioinformatics       Date:  2010-06-17       Impact factor: 3.169

5.  Genomic copy number analysis of Chernobyl papillary thyroid carcinoma in the Ukrainian-American Cohort.

Authors:  Martin Selmansberger; Herbert Braselmann; Julia Hess; Tetiana Bogdanova; Michael Abend; Mykola Tronko; Alina Brenner; Horst Zitzelsberger; Kristian Unger
Journal:  Carcinogenesis       Date:  2015-08-29       Impact factor: 4.944

6.  Relevance of PTEN loss in brain metastasis formation in breast cancer patients.

Authors:  Harriet Wikman; Katrin Lamszus; Niclas Detels; Liubov Uslar; Michaela Wrage; Christian Benner; Ina Hohensee; Bauke Ylstra; Kathrin Eylmann; Marc Zapatka; Guido Sauter; Dirk Kemming; Markus Glatzel; Volkmar Müller; Manfred Westphal; Klaus Pantel
Journal:  Breast Cancer Res       Date:  2012-03-19       Impact factor: 6.466

7.  Gastric cancers of Western European and African patients show different patterns of genomic instability.

Authors:  Tineke E Buffart; Melanie Louw; Nicole C T van Grieken; Marianne Tijssen; Beatriz Carvalho; Bauke Ylstra; Heike Grabsch; Chris J J Mulder; Cornelis J H van de Velde; Schalk W van der Merwe; Gerrit A Meijer
Journal:  BMC Med Genomics       Date:  2011-01-13       Impact factor: 3.063

8.  Deletion of chromosome 4q predicts outcome in stage II colon cancer patients.

Authors:  R P M Brosens; E J T H Belt; J C Haan; T E Buffart; B Carvalho; H Grabsch; P Quirke; M A Cuesta; A F Engel; B Ylstra; G A Meijer
Journal:  Cell Oncol (Dordr)       Date:  2011-06-30       Impact factor: 6.730

9.  CGHregions: dimension reduction for array CGH data with minimal information loss.

Authors:  Mark A van de Wiel; Wessel N van Wieringen
Journal:  Cancer Inform       Date:  2007-02-08

10.  Normalized, segmented or called aCGH data?

Authors:  Wessel N van Wieringen; Mark A van de Wiel; Bauke Ylstra
Journal:  Cancer Inform       Date:  2007-09-17
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.