Literature DB >> 15879228

Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales.

Jonathan H Badger1, Jonathan A Eisen1, Naomi L Ward1.   

Abstract

Hyphomonas neptunium is a marine prosthecate alpha-proteobacterium currently classified as a member of the order 'Rhodobacterales'. Although this classification is supported by 16S rRNA gene sequence phylogeny, 23S rRNA gene sequence analysis, concatenated ribosomal proteins, HSP70 and EF-Tu phylogenies all support classifying Hyphomonas neptunium as a member of the Caulobacterales instead. The possible reasons why the 16S rRNA gene sequence gives conflicting results in this case are also discussed.

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Year:  2005        PMID： 15879228     DOI： 10.1099/ijs.0.63510-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN： 1466-5026            Impact factor:   2.747


  15 in total

1.  Molecular toolbox for genetic manipulation of the stalked budding bacterium Hyphomonas neptunium.

Authors:  Alexandra Jung; Sabrina Eisheuer; Emöke Cserti; Oliver Leicht; Wolfgang Strobel; Andrea Möll; Susan Schlimpert; Juliane Kühn; Martin Thanbichler
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  Comparative phylogenies of ribosomal proteins and the 16S rRNA gene at higher ranks of the class Actinobacteria.

Authors:  Zhitang Lu; Weiwei Zhang
Journal:  Curr Microbiol       Date:  2012-04-06       Impact factor: 2.188

3.  Integrative and quantitative view of the CtrA regulatory network in a stalked budding bacterium.

Authors:  Oliver Leicht; Muriel C F van Teeseling; Gaël Panis; Celine Reif; Heiko Wendt; Patrick H Viollier; Martin Thanbichler
Journal:  PLoS Genet       Date:  2020-04-23       Impact factor: 5.917

4.  A robust species tree for the alphaproteobacteria.

Authors:  Kelly P Williams; Bruno W Sobral; Allan W Dickerman
Journal:  J Bacteriol       Date:  2007-05-04       Impact factor: 3.490

5.  Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Authors:  Craig E Nelson; Stuart J Goldberg; Linda Wegley Kelly; Andreas F Haas; Jennifer E Smith; Forest Rohwer; Craig A Carlson
Journal:  ISME J       Date:  2013-01-10       Impact factor: 10.302

6.  The phylogenetic diversity of metagenomes.

Authors:  Steven W Kembel; Jonathan A Eisen; Katherine S Pollard; Jessica L Green
Journal:  PLoS One       Date:  2011-08-31       Impact factor: 3.240

7.  A simple, fast, and accurate method of phylogenomic inference.

Authors:  Martin Wu; Jonathan A Eisen
Journal:  Genome Biol       Date:  2008-10-13       Impact factor: 13.583

8.  Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria.

Authors:  Kevin Penn; Caroline Jenkins; Markus Nett; Daniel W Udwary; Erin A Gontang; Ryan P McGlinchey; Brian Foster; Alla Lapidus; Sheila Podell; Eric E Allen; Bradley S Moore; Paul R Jensen
Journal:  ISME J       Date:  2009-05-28       Impact factor: 10.302

9.  Metagenomic exploration of viruses throughout the Indian Ocean.

Authors:  Shannon J Williamson; Lisa Zeigler Allen; Hernan A Lorenzi; Douglas W Fadrosh; Daniel Brami; Mathangi Thiagarajan; John P McCrow; Andrey Tovchigrechko; Shibu Yooseph; J Craig Venter
Journal:  PLoS One       Date:  2012-10-17       Impact factor: 3.240

10.  Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum.

Authors:  Dongying Wu; Jason Raymond; Martin Wu; Sourav Chatterji; Qinghu Ren; Joel E Graham; Donald A Bryant; Frank Robb; Albert Colman; Luke J Tallon; Jonathan H Badger; Ramana Madupu; Naomi L Ward; Jonathan A Eisen
Journal:  PLoS One       Date:  2009-01-16       Impact factor: 3.240
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