Literature DB >> 15876867

Cyclic peptides, a chemical genetics tool for biologists.

Alexander R Horswill1, Stephen J Benkovic.   

Abstract

The genomics era has presented scientists with an overwhelming amount of sequence information that encodes for a continuously expanding array of metabolic pathways and regulatory networks. In order to unravel this elaborate maze, effective approaches need to be pioneered, and cyclic peptides represent an exciting new tool that can aid this challenging task. There are considerable benefits to cyclic peptides including enhanced protein binding affinity and metabolic stability, but perhaps most important is the ability to biologically synthesize them using intein chemistry. This capacity for genetic encoding allows biologists access to diverse, intracellular small-molecule libraries that can be tailored for numerous chemical genetics approaches. An increasing number of molecular strategies are being developed to aid in the implementation of cyclic peptides in forward and reverse genetics experiments, which will provide researchers with a powerful toolbox to complement existing genomic methodologies.

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Year:  2005        PMID: 15876867     DOI: 10.4161/cc.4.4.1585

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  12 in total

1.  A circularly permuted beta-lactamase as a novel reporter for evaluation of protein cyclization efficiency.

Authors:  Jeong Seon Kwon; Jyotiranjan Bal; Hai Min Hwang; Jeong-Yoon Kim
Journal:  J Microbiol       Date:  2008-08-31       Impact factor: 3.422

2.  Expanding the amino acid repertoire of ribosomal polypeptide synthesis via the artificial division of codon boxes.

Authors:  Yoshihiko Iwane; Azusa Hitomi; Hiroshi Murakami; Takayuki Katoh; Yuki Goto; Hiroaki Suga
Journal:  Nat Chem       Date:  2016-02-01       Impact factor: 24.427

3.  Design and NMR studies of cyclic peptides targeting the N-terminal domain of the protein tyrosine phosphatase YopH.

Authors:  Marilisa Leone; Elisa Barile; Russell Dahl; Maurizio Pellecchia
Journal:  Chem Biol Drug Des       Date:  2010-11-30       Impact factor: 2.817

4.  Evolution of cyclic peptide protease inhibitors.

Authors:  Travis S Young; Douglas D Young; Insha Ahmad; John M Louis; Stephen J Benkovic; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

5.  Discovery of Cyclic Peptide Binders from Chemically Constrained Yeast Display Libraries.

Authors:  Kaitlyn Bacon; Stefano Menegatti; Balaji M Rao
Journal:  Methods Mol Biol       Date:  2022

6.  Rapid selection of cyclic peptides that reduce alpha-synuclein toxicity in yeast and animal models.

Authors:  Joshua A Kritzer; Shusei Hamamichi; J Michael McCaffery; Sandro Santagata; Todd A Naumann; Kim A Caldwell; Guy A Caldwell; Susan Lindquist
Journal:  Nat Chem Biol       Date:  2009-07-13       Impact factor: 15.040

7.  Designing Well-Structured Cyclic Pentapeptides Based on Sequence-Structure Relationships.

Authors:  Diana P Slough; Sean M McHugh; Ashleigh E Cummings; Peng Dai; Bradley L Pentelute; Joshua A Kritzer; Yu-Shan Lin
Journal:  J Phys Chem B       Date:  2018-03-28       Impact factor: 2.991

8.  Application of ring-closing metathesis macrocyclization to the development of Tsg101-binding antagonists.

Authors:  Fa Liu; Andrew G Stephen; Abdul A Waheed; Eric O Freed; Robert J Fisher; Terrence R Burke
Journal:  Bioorg Med Chem Lett       Date:  2009-10-29       Impact factor: 2.823

9.  Genetically encoded libraries of nonstandard peptides.

Authors:  Takashi Kawakami; Hiroshi Murakami
Journal:  J Nucleic Acids       Date:  2012-10-14

10.  Discovery and characterization of a novel cyclic peptide that effectively inhibits ephrin binding to the EphA4 receptor and displays anti-angiogenesis activity.

Authors:  Xiaofeng Han; Yan Xu; Yilei Yang; Jingle Xi; Wang Tian; Srinivas Duggineni; Ziwei Huang; Jing An
Journal:  PLoS One       Date:  2013-11-12       Impact factor: 3.240

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