Literature DB >> 15871461

An evolutionary scenario for genomic imprinting of Impact lying between nonimprinted neighbors.

Kohji Okamura1, Yoichi Yamada, Yoshiyuki Sakaki, Takashi Ito.   

Abstract

Mouse Impact is the sole imprinted gene mapped to chromosome 18 to date. Despite its remarkable evolutionary conservation, human IMPACT was shown to escape genomic imprinting. Here we identified Hrh4 and Osbpl1 as the distal and proximal nearest neighbors of Impact, respectively, and found that both genes are expressed biallelically. Thus, in contrast with most imprinted genes, Impact fails to show apparent physical clustering with other imprinted genes. Since Impact not only lies in an intergenic region but also consists of 11 exons, it does not seem to be an imprinted gene generated by a retrotransposition. Hazardous effects of overexpressed Impact, a genomic segment containing paralogues of Hrh4 and Osbpl1 but not of Impact, and enhanced promoter activity in the mouse led us to propose an alternative model. This model assumes that segmental duplication followed by enhancement of the promoter activity in the lineage to mouse is responsible for the species-specific imprinting of Impact.

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Year:  2004        PMID: 15871461     DOI: 10.1093/dnares/11.6.381

Source DB:  PubMed          Journal:  DNA Res        ISSN: 1340-2838            Impact factor:   4.458


  4 in total

1.  SNP-specific array-based allele-specific expression analysis.

Authors:  Hans T Bjornsson; Thomas J Albert; Christine M Ladd-Acosta; Roland D Green; Michael A Rongione; Christina M Middle; Rafael A Irizarry; Karl W Broman; Andrew P Feinberg
Journal:  Genome Res       Date:  2008-03-27       Impact factor: 9.043

2.  A phylogenetic approach to test for evidence of parental conflict or gene duplications associated with protein-encoding imprinted orthologous genes in placental mammals.

Authors:  Mary J O'Connell; Noeleen B Loughran; Thomas A Walsh; Mark T A Donoghue; Karl J Schmid; Charles Spillane
Journal:  Mamm Genome       Date:  2010-10-08       Impact factor: 2.957

3.  RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis.

Authors:  Thiet Minh Vu; Miyuki Nakamura; Joseph P Calarco; Daichi Susaki; Pei Qi Lim; Tetsu Kinoshita; Tetsuya Higashiyama; Robert A Martienssen; Frédéric Berger
Journal:  Development       Date:  2013-06-12       Impact factor: 6.868

4.  Characterization of the differentially methylated region of the Impact gene that exhibits Glires-specific imprinting.

Authors:  Kohji Okamura; Richard F Wintle; Stephen W Scherer
Journal:  Genome Biol       Date:  2008-11-13       Impact factor: 13.583

  4 in total

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