Literature DB >> 15870825

High-throughput pedigree drawing.

Ville-Petteri Mäkinen1, Maija Parkkonen, Maija Wessman, Per-Henrik Groop, Timo Kanninen, Kimmo Kaski.   

Abstract

Family trees have long been a valuable visual tool for geneticists in identifying clusters of inherited traits and genotypes. As more data are collected, drawing the graphs by hand becomes impractical and, for this reason, we have developed the pedigree software CraneFoot. It can process any family graph with minimal computational cost by making a pedigree transformation that enables the use of a linear node positioning algorithm. The program is designed for automated drawing to printed media and efficient visual classification of genetically interesting families from large data sets. It also incorporates a robust pedigree topology check with detailed error messages.

Mesh:

Year:  2005        PMID: 15870825     DOI: 10.1038/sj.ejhg.5201430

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  21 in total

1.  Family-specific aggregation of lipid GWAS variants confers the susceptibility to familial hypercholesterolemia in a large Austrian family.

Authors:  Elina Nikkola; Arthur Ko; Marcus Alvarez; Rita M Cantor; Kristina Garske; Elliot Kim; Stephanie Gee; Alejandra Rodriguez; Reinhard Muxel; Niina Matikainen; Sanni Söderlund; Mahdi M Motazacker; Jan Borén; Claudia Lamina; Florian Kronenberg; Wolfgang J Schneider; Aarno Palotie; Markku Laakso; Marja-Riitta Taskinen; Päivi Pajukanta
Journal:  Atherosclerosis       Date:  2017-07-22       Impact factor: 5.162

2.  Clinical and molecular characterization of a severe form of partial lipodystrophy expanding the phenotype of PPARγ deficiency.

Authors:  Philippe M Campeau; Olga Astapova; Rebecca Martins; Jean Bergeron; Patrick Couture; Robert A Hegele; Todd Leff; Claude Gagné
Journal:  J Lipid Res       Date:  2012-07-02       Impact factor: 5.922

3.  Systematic haplotype analysis resolves a complex plasma plant sterol locus on the Micronesian Island of Kosrae.

Authors:  Eimear E Kenny; Alexander Gusev; Kaitlin Riegel; Dieter Lütjohann; Jennifer K Lowe; Jacqueline Salit; Julian B Maller; Markus Stoffel; Mark J Daly; David M Altshuler; Jeffrey M Friedman; Jan L Breslow; Itsik Pe'er; Ephraim Sehayek
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-10       Impact factor: 11.205

4.  PRIMUS: rapid reconstruction of pedigrees from genome-wide estimates of identity by descent.

Authors:  Jeffrey Staples; Dandi Qiao; Michael H Cho; Edwin K Silverman; Deborah A Nickerson; Jennifer E Below
Journal:  Am J Hum Genet       Date:  2014-10-30       Impact factor: 11.025

5.  Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.

Authors:  Carolina Nobre; Nils Gehlenborg; Hilary Coon; Alexander Lex
Journal:  IEEE Trans Vis Comput Graph       Date:  2018-03-06       Impact factor: 4.579

6.  The kinship2 R package for pedigree data.

Authors:  Jason P Sinnwell; Terry M Therneau; Daniel J Schaid
Journal:  Hum Hered       Date:  2014-07-29       Impact factor: 0.444

7.  Partitioning of copy-number genotypes in pedigrees.

Authors:  Louis-Philippe Lemieux Perreault; Gregor U Andelfinger; Géraldine Asselin; Marie-Pierre Dubé
Journal:  BMC Bioinformatics       Date:  2010-05-03       Impact factor: 3.169

8.  Spatial and genetic epidemiology of hookworm in a rural community in Uganda.

Authors:  Rachel L Pullan; Narcis B Kabatereine; Rupert J Quinnell; Simon Brooker
Journal:  PLoS Negl Trop Dis       Date:  2010-06-15

9.  Heritability of Plasmodium parasite density in a rural Ugandan community.

Authors:  Rachel L Pullan; Hasifa Bukirwa; Robert W Snow; Simon Brooker
Journal:  Am J Trop Med Hyg       Date:  2010-11       Impact factor: 2.345

10.  A cytogenetic abnormality and rare coding variants identify ABCA13 as a candidate gene in schizophrenia, bipolar disorder, and depression.

Authors:  Helen M Knight; Benjamin S Pickard; Alan Maclean; Mary P Malloy; Dinesh C Soares; Allan F McRae; Alison Condie; Angela White; William Hawkins; Kevin McGhee; Margaret van Beck; Donald J MacIntyre; John M Starr; Ian J Deary; Peter M Visscher; David J Porteous; Ronald E Cannon; David St Clair; Walter J Muir; Douglas H R Blackwood
Journal:  Am J Hum Genet       Date:  2009-12       Impact factor: 11.025

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