Literature DB >> 15870191

Genomewide production of multipurpose alleles for the functional analysis of the mouse genome.

Frank Schnütgen1, Silke De-Zolt, Petra Van Sloun, Melanie Hollatz, Thomas Floss, Jens Hansen, Joachim Altschmied, Claudia Seisenberger, Norbert B Ghyselinck, Patricia Ruiz, Pierre Chambon, Wolfgang Wurst, Harald von Melchner.   

Abstract

A type of retroviral gene trap vectors has been developed that can induce conditional mutations in most genes expressed in mouse embryonic stem (ES) cells. The vectors rely on directional site-specific recombination systems that can repair and re-induce gene trap mutations when activated in succession. After the gene traps are inserted into the mouse genome, genetic mutations can be produced at a particular time and place in somatic cells. In addition to their conditional features, the vectors create multipurpose alleles amenable to a wide range of post-insertional modifications. Here we have used these directional recombination vectors to assemble the largest library of ES cell lines with conditional mutations in single genes yet assembled, presently totaling 1,000 unique genes. The trapped ES cell lines, which can be ordered from the German Gene Trap Consortium, are freely available to the scientific community.

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Mesh:

Year:  2005        PMID: 15870191      PMCID: PMC1129123          DOI: 10.1073/pnas.0502273102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  High-efficiency deleter mice show that FLPe is an alternative to Cre-loxP.

Authors:  C I Rodríguez; F Buchholz; J Galloway; R Sequerra; J Kasper; R Ayala; A F Stewart; S M Dymecki
Journal:  Nat Genet       Date:  2000-06       Impact factor: 38.330

2.  Selection-marker-free modification of the murine beta-casein gene using a lox2272 [correction of lox2722] site.

Authors:  A F Kolb
Journal:  Anal Biochem       Date:  2001-03       Impact factor: 3.365

Review 3.  Determination of gene function by homologous recombination using embryonic stem cells and knockout mice.

Authors:  A Mansouri
Journal:  Methods Mol Biol       Date:  2001

Review 4.  Functional genomics by gene-trapping in embryonic stem cells.

Authors:  T Floss; W Wurst
Journal:  Methods Mol Biol       Date:  2002

Review 5.  Gene-trap mutagenesis: past, present and beyond.

Authors:  W L Stanford; J B Cohn; S P Cordes
Journal:  Nat Rev Genet       Date:  2001-10       Impact factor: 53.242

Review 6.  Coping with kinetic and thermodynamic barriers: RMCE, an efficient strategy for the targeted integration of transgenes.

Authors:  A Baer; J Bode
Journal:  Curr Opin Biotechnol       Date:  2001-10       Impact factor: 9.740

Review 7.  Systematic approaches to mouse mutagenesis.

Authors:  S D Brown; R Balling
Journal:  Curr Opin Genet Dev       Date:  2001-06       Impact factor: 5.578

8.  Post-entrapment genome engineering: first exon size does not affect the expression of fusion transcripts generated by gene entrapment.

Authors:  Anna B Osipovich; Aparna Singh; H Earl Ruley
Journal:  Genome Res       Date:  2005-03       Impact factor: 9.043

9.  Functional analysis of secreted and transmembrane proteins critical to mouse development.

Authors:  K J Mitchell; K I Pinson; O G Kelly; J Brennan; J Zupicich; P Scherz; P A Leighton; L V Goodrich; X Lu; B J Avery; P Tate; K Dill; E Pangilinan; P Wakenight; M Tessier-Lavigne; W C Skarnes
Journal:  Nat Genet       Date:  2001-07       Impact factor: 38.330

10.  Genomewide trapping of genes that encode secreted and transmembrane proteins repressed by oncogenic signaling.

Authors:  M Gebauer; H von Melchner; T Beckers
Journal:  Genome Res       Date:  2001-11       Impact factor: 9.043

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  82 in total

1.  Gene trap mutagenesis in the mouse.

Authors:  Roland H Friedel; Philippe Soriano
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

2.  Mouse mutants and phenotypes: accessing information for the study of mammalian gene function.

Authors:  Martin Ringwald; Janan T Eppig
Journal:  Methods       Date:  2010-12-23       Impact factor: 3.608

3.  Two ways to trap a gene in mice.

Authors:  William C Skarnes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-06       Impact factor: 11.205

Review 4.  High-throughput analysis of signals regulating stem cell fate and function.

Authors:  Gregory H Underhill; Sangeeta N Bhatia
Journal:  Curr Opin Chem Biol       Date:  2007-07-25       Impact factor: 8.822

Review 5.  Adopting the good reFLEXes when generating conditional alterations in the mouse genome.

Authors:  Frank Schnütgen; Norbert B Ghyselinck
Journal:  Transgenic Res       Date:  2007-04-06       Impact factor: 2.788

6.  Conditionals by inversion provide a universal method for the generation of conditional alleles.

Authors:  Aris N Economides; David Frendewey; Peter Yang; Melissa G Dominguez; Anthony T Dore; Ivan B Lobov; Trikaldarshi Persaud; Jose Rojas; Joyce McClain; Peter Lengyel; Gustavo Droguett; Rostislav Chernomorsky; Sean Stevens; Wojtek Auerbach; Thomas M Dechiara; William Pouyemirou; Joseph M Cruz; Kieran Feeley; Ian A Mellis; Jason Yasenchack; Sarah J Hatsell; Liqin Xie; Esther Latres; Lily Huang; Yuhong Zhang; Evangelos Pefanis; Dimitris Skokos; Ron A Deckelbaum; Susan D Croll; Samuel Davis; David M Valenzuela; Nicholas W Gale; Andrew J Murphy; George D Yancopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-05       Impact factor: 11.205

7.  All-in-one live: genes trapped, tagged and conditionally broken.

Authors:  Mary C Mullins
Journal:  Nat Methods       Date:  2011-06       Impact factor: 28.547

8.  Resources for proteomics in mouse embryonic stem cells.

Authors:  Frank Schnütgen; Franziska Ehrmann; Ina Poser; Nina C Hubner; Jens Hansen; Thomas Floss; Ingrid deVries; Wolfgang Wurst; Anthony Hyman; Matthias Mann; Harald von Melchner
Journal:  Nat Methods       Date:  2011-02       Impact factor: 28.547

9.  A conditional system to specifically link disruption of protein-coding function with reporter expression in mice.

Authors:  Shin-Heng Chiou; Caroline Kim-Kiselak; Viviana I Risca; Megan K Heimann; Chen-Hua Chuang; Aurora A Burds; William J Greenleaf; Tyler E Jacks; David M Feldser; Monte M Winslow
Journal:  Cell Rep       Date:  2014-06-12       Impact factor: 9.423

10.  P-TEFb- the final frontier.

Authors:  Jiri Kohoutek
Journal:  Cell Div       Date:  2009-09-02       Impact factor: 5.130

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