Literature DB >> 15866536

Metal-catalyzed oxidation reactions and mass spectrometry: the roles of ascorbate and different oxidizing agents in determining Cu-protein-binding sites.

Juma D Bridgewater1, Richard W Vachet.   

Abstract

Further study has been made of metal-catalyzed oxidation (MCO) reactions and mass spectrometry as a method to determine the binding site of copper in metalloproteins. The role of ascorbate and a variety of oxidizing agents, including O2, H2O2, and S2O8(2-), have been investigated using Cu/Zn superoxide dismutase (SOD) as a model system. Ascorbate is found to play two competing roles in the MCO reactions. It reduces Cu(II), which initiates and maintains the generation of reactive oxygen species, and it scavenges radicals, which helps to localize oxidation products to amino acids near the metal center. An ascorbate concentration of 100 mM is found to be optimal with regard to localizing oxidation products to only the Cu-binding residues (His44, His46, His61, and His118) of Cu/Zn SOD. This concentration of ascorbate is very similar to the optimum concentration found in our previous studies of different Cu-binding proteins. Another notable result from this study is the observation that S2O8(2-) is more effective as an oxidant than O2 or H2O2 in the MCO reactions. Because S2O8(2-) is more stable in solution than H2O2, using it as an oxidizing agent results in much less nonspecific oxidation to the protein. The overall results of this study suggest that general MCO reaction conditions may exist for determining the metal-binding site of a wide range of Cu-binding proteins.

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Year:  2005        PMID: 15866536     DOI: 10.1016/j.ab.2005.02.034

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  18 in total

1.  Distinct oxidative cleavage and modification of bovine [Cu- Zn]-SOD by an ascorbic acid/Cu(II) system: Identification of novel copper binding site on SOD molecule.

Authors:  Hiroshi Uehara; Shen Luo; Baikuntha Aryal; Rodney L Levine; V Ashutosh Rao
Journal:  Free Radic Biol Med       Date:  2016-02-10       Impact factor: 7.376

2.  The effect of histidine oxidation on the dissociation patterns of peptide ions.

Authors:  Juma D Bridgewater; R Srikanth; Jihyeon Lim; Richard W Vachet
Journal:  J Am Soc Mass Spectrom       Date:  2006-12-08       Impact factor: 3.109

3.  Improved sequencing of oxidized cysteine and methionine containing peptides using electron transfer dissociation.

Authors:  R Srikanth; Jonathan Wilson; Juma D Bridgewater; Jason R Numbers; Jihyeon Lim; Mark R Olbris; Ali Kettani; Richard W Vachet
Journal:  J Am Soc Mass Spectrom       Date:  2007-05-23       Impact factor: 3.109

4.  Using metal-catalyzed oxidation reactions and mass spectrometry to identify amino acid residues within 10 A of the metal in Cu-binding proteins.

Authors:  Juma D Bridgewater; Jihyeon Lim; Richard W Vachet
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-26       Impact factor: 3.109

Review 5.  Stability of protein pharmaceuticals: an update.

Authors:  Mark Cornell Manning; Danny K Chou; Brian M Murphy; Robert W Payne; Derrick S Katayama
Journal:  Pharm Res       Date:  2010-02-09       Impact factor: 4.200

6.  Modeling of the DNA-binding site of yeast Pms1 by mass spectrometry.

Authors:  Allison N Schorzman; Lalith Perera; Jenny M Cutalo-Patterson; Lars C Pedersen; Lee G Pedersen; Thomas A Kunkel; Kenneth B Tomer
Journal:  DNA Repair (Amst)       Date:  2011-02-26

7.  Identification of the copper(II) coordinating residues in the prion protein by metal-catalyzed oxidation mass spectrometry: evidence for multiple isomers at low copper(II) loadings.

Authors:  Rapole Srikanth; Jonathan Wilson; Colin S Burns; Richard W Vachet
Journal:  Biochemistry       Date:  2008-08-09       Impact factor: 3.162

8.  Experimental approach to controllably vary protein oxidation while minimizing electrode adsorption for boron-doped diamond electrochemical surface mapping applications.

Authors:  Carlee S McClintock; Robert L Hettich
Journal:  Anal Chem       Date:  2012-12-17       Impact factor: 6.986

9.  Pulsed electron beam water radiolysis for submicrosecond hydroxyl radical protein footprinting.

Authors:  Caroline Watson; Ireneusz Janik; Tiandi Zhuang; Olga Charvátová; Robert J Woods; Joshua S Sharp
Journal:  Anal Chem       Date:  2009-04-01       Impact factor: 6.986

10.  Copper binding to beta-2-microglobulin and its pre-amyloid oligomers.

Authors:  Rapole Srikanth; Vanessa Leah Mendoza; Juma D Bridgewater; Guanshi Zhang; Richard W Vachet
Journal:  Biochemistry       Date:  2009-10-20       Impact factor: 3.162

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