Literature DB >> 15860421

Structure-function relationships in plant phenylpropanoid biosynthesis.

Joseph P Noel1, Michael B Austin, Erin K Bomati.   

Abstract

Plants, as sessile organisms, evolve and exploit metabolic systems to create a rich repertoire of complex natural products that hold adaptive significance for their survival in challenging ecological niches on earth. As an experimental tool set, structural biology provides a high-resolution means to uncover detailed information about the structure-function relationships of metabolic enzymes at the atomic level. Together with genomic and biochemical approaches and an appreciation of molecular evolution, structural enzymology holds great promise for addressing a number of questions relating to secondary or, more appropriately, specialized metabolism. Why is secondary metabolism so adaptable? How are reactivity, regio-chemistry and stereo-chemistry steered during the multi-step conversion of substrates into products? What are the vestigial structural and mechanistic traits that remain in biosynthetic enzymes during the diversification of substrate and product selectivity? What does the catalytic landscape look like as an enzyme family traverses all possible lineages en route to the acquisition of new substrate and/or product specificities? And how can one rationally engineer biosynthesis using the unique perspectives of evolution and structural biology to create novel chemicals for human use?

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Year:  2005        PMID: 15860421      PMCID: PMC2861907          DOI: 10.1016/j.pbi.2005.03.013

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  28 in total

Review 1.  Structural genomics: computational methods for structure analysis.

Authors:  Sharon Goldsmith-Fischman; Barry Honig
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

2.  Chalcone synthase-like gene in the liverwort, Marchantia paleacea var. diptera.

Authors:  Shuichi Harashima; Hiroyoshi Takano; Kanji Ono; Susumu Takio
Journal:  Plant Cell Rep       Date:  2004-05-28       Impact factor: 4.570

Review 3.  Metabolic channeling in plants.

Authors:  Brenda S J Winkel
Journal:  Annu Rev Plant Biol       Date:  2004       Impact factor: 26.379

4.  Inference of protein function from protein structure.

Authors:  Debnath Pal; David Eisenberg
Journal:  Structure       Date:  2005-01       Impact factor: 5.006

5.  Engineering delta 9-16:0-acyl carrier protein (ACP) desaturase specificity based on combinatorial saturation mutagenesis and logical redesign of the castor delta 9-18:0-ACP desaturase.

Authors:  E Whittle; J Shanklin
Journal:  J Biol Chem       Date:  2001-04-09       Impact factor: 5.157

Review 6.  Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms.

Authors:  Ben Shen
Journal:  Curr Opin Chem Biol       Date:  2003-04       Impact factor: 8.822

7.  An aldol switch discovered in stilbene synthases mediates cyclization specificity of type III polyketide synthases.

Authors:  Michael B Austin; Marianne E Bowman; Jean-Luc Ferrer; Joachim Schröder; Joseph P Noel
Journal:  Chem Biol       Date:  2004-09

8.  Benzophenone synthase and chalcone synthase from Hypericum androsaemum cell cultures: cDNA cloning, functional expression, and site-directed mutagenesis of two polyketide synthases.

Authors:  Benye Liu; Hildegard Falkenstein-Paul; Werner Schmidt; Ludger Beerhues
Journal:  Plant J       Date:  2003-06       Impact factor: 6.417

9.  Secondary metabolites from the liverwort Tylimanthus renifolius.

Authors:  Hildegard Feld; Josef Zapp; Hans Becker
Journal:  Phytochemistry       Date:  2003-12       Impact factor: 4.072

Review 10.  Structure-based functional inference in structural genomics.

Authors:  Sung-Hou Kim; Dong Hae Shin; In-Geol Choi; Ursula Schulze-Gahmen; Shengfeng Chen; Rosalind Kim
Journal:  J Struct Funct Genomics       Date:  2003
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  16 in total

1.  Biosynthesis of the major tetrahydroxystilbenes in spruce, astringin and isorhapontin, proceeds via resveratrol and is enhanced by fungal infection.

Authors:  Almuth Hammerbacher; Steven G Ralph; Joerg Bohlmann; Trevor M Fenning; Jonathan Gershenzon; Axel Schmidt
Journal:  Plant Physiol       Date:  2011-08-24       Impact factor: 8.340

2.  Lipid, phenol and carotenoid changes in 'Bianca' grapevine leaves after mechanical wounding: a case study.

Authors:  Giulia Chitarrini; Luca Zulini; Domenico Masuero; Urska Vrhovsek
Journal:  Protoplasma       Date:  2017-03-21       Impact factor: 3.356

3.  Construction, expression, and characterization of Arabidopsis thaliana 4CL and Arachis hypogaea RS fusion gene 4CL::RS in Escherichia coli.

Authors:  Erhao Zhang; Xuefeng Guo; Zhifen Meng; Jin Wang; Jia Sun; Xi Yao; Hang Xun
Journal:  World J Microbiol Biotechnol       Date:  2015-06-20       Impact factor: 3.312

4.  Identification and Expression Analysis of Stilbene Synthase Genes in Arachis hypogaea in Response to Methyl Jasmonate and Salicylic Acid Induction.

Authors:  Zuhra Qayyum; Fatima Noureen; Maryam Khan; Marrium Khan; Ghulam Haider; Faiza Munir; Alvina Gul; Rabia Amir
Journal:  Plants (Basel)       Date:  2022-07-05

5.  Comparative transcriptome profiling of potassium starvation responsiveness in two contrasting watermelon genotypes.

Authors:  Molin Fan; Yuan Huang; Yaqin Zhong; Qiusheng Kong; Junjun Xie; Mengliang Niu; Yong Xu; Zhilong Bie
Journal:  Planta       Date:  2013-11-02       Impact factor: 4.116

Review 6.  Engineering microbes for plant polyketide biosynthesis.

Authors:  François-Xavier Lussier; David Colatriano; Zach Wiltshire; Jonathan E Page; Vincent J J Martin
Journal:  Comput Struct Biotechnol J       Date:  2013-02-22       Impact factor: 7.271

Review 7.  When plants produce not enough or at all: metabolic engineering of flavonoids in microbial hosts.

Authors:  Emmanouil A Trantas; Mattheos A G Koffas; Peng Xu; Filippos Ververidis
Journal:  Front Plant Sci       Date:  2015-01-29       Impact factor: 5.753

8.  Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses.

Authors:  Alessandro Vannozzi; Ian B Dry; Marianna Fasoli; Sara Zenoni; Margherita Lucchin
Journal:  BMC Plant Biol       Date:  2012-08-03       Impact factor: 4.215

9.  Synchronization of developmental processes and defense signaling by growth regulating transcription factors.

Authors:  Jinyi Liu; J Hollis Rice; Nana Chen; Thomas J Baum; Tarek Hewezi
Journal:  PLoS One       Date:  2014-05-29       Impact factor: 3.240

10.  Regulatory network rewiring for secondary metabolism in Arabidopsis thaliana under various conditions.

Authors:  Qi Lv; Rong Cheng; Tieliu Shi
Journal:  BMC Plant Biol       Date:  2014-07-04       Impact factor: 4.215

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