Literature DB >> 15858274

Water molecules in the antibody-antigen interface of the structure of the Fab HyHEL-5-lysozyme complex at 1.7 A resolution: comparison with results from isothermal titration calorimetry.

Gerson H Cohen1, Enid W Silverton, Eduardo A Padlan, Fred Dyda, Jamie A Wibbenmeyer, Richard C Willson, David R Davies.   

Abstract

The structure of the complex between hen egg-white lysozyme and the Fab HyHEL-5 at 2.7 A resolution has previously been reported [Cohen et al. (1996), Acta Cryst. D52, 315-326]. With the availability of recombinant Fab, the X-ray structure of the complex has been re-evaluated at 1.7 A resolution. The refined structure has yielded a detailed picture of the Fab-lysozyme interface, showing the high complementarity of the protein surfaces as well as several water molecules within the interface that complete the good fit. The model of the full complex has improved significantly, yielding an R(work) of 19.5%. With this model, the structural results can be compared with the results of isothermal titration calorimetry. An attempt has been made to estimate the changes in bound waters that accompany complex formation and the difficulties inherent in using the crystal structures to provide the information necessary to make this calculation are discussed.

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Year:  2005        PMID: 15858274     DOI: 10.1107/S0907444905007870

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  18 in total

1.  pH-dependent association of proteins. The test case of monoclonal antibody HyHEL-5 and its antigen hen egg white lysozyme.

Authors:  Maciej Długosz; Jan M Antosiewicz; Joanna Trylska
Journal:  J Phys Chem B       Date:  2009-11-26       Impact factor: 2.991

2.  Shape complementarity and hydrogen bond preferences in protein-protein interfaces: implications for antibody modeling and protein-protein docking.

Authors:  Daisuke Kuroda; Jeffrey J Gray
Journal:  Bioinformatics       Date:  2016-04-19       Impact factor: 6.937

3.  Structural Basis for Regulated Proteolysis by the α-Secretase ADAM10.

Authors:  Tom C M Seegar; Lauren B Killingsworth; Nayanendu Saha; Peter A Meyer; Dhabaleswar Patra; Brandon Zimmerman; Peter W Janes; Eric Rubinstein; Dimitar B Nikolov; Georgios Skiniotis; Andrew C Kruse; Stephen C Blacklow
Journal:  Cell       Date:  2017-12-07       Impact factor: 41.582

4.  Structure of a high-affinity "mimotope" peptide bound to HIV-1-neutralizing antibody b12 explains its inability to elicit gp120 cross-reactive antibodies.

Authors:  Erica Ollmann Saphire; Marinieve Montero; Alfredo Menendez; Nienke E van Houten; Melita B Irving; Ralph Pantophlet; Michael B Zwick; Paul W H I Parren; Dennis R Burton; Jamie K Scott; Ian A Wilson
Journal:  J Mol Biol       Date:  2007-01-27       Impact factor: 5.469

5.  Unusual water-mediated antigenic recognition of the proinflammatory cytokine interleukin-18.

Authors:  Maria A Argiriadi; Tao Xiang; Chengbin Wu; Tariq Ghayur; David W Borhani
Journal:  J Biol Chem       Date:  2009-06-24       Impact factor: 5.157

Review 6.  Computer-aided antibody design.

Authors:  Daisuke Kuroda; Hiroki Shirai; Matthew P Jacobson; Haruki Nakamura
Journal:  Protein Eng Des Sel       Date:  2012-06-02       Impact factor: 1.650

7.  DockAnalyse: an application for the analysis of protein-protein interactions.

Authors:  Isaac Amela; Pedro Delicado; Antonio Gómez; Sílvia Bonàs; Enrique Querol; Juan Cedano
Journal:  BMC Struct Biol       Date:  2010-10-22

Review 8.  The structural basis of antibody-antigen recognition.

Authors:  Inbal Sela-Culang; Vered Kunik; Yanay Ofran
Journal:  Front Immunol       Date:  2013-10-08       Impact factor: 7.561

9.  Quantifying the molecular origins of opposite solvent effects on protein-protein interactions.

Authors:  Vincent Vagenende; Alvin X Han; Han B Pek; Bernard L W Loo
Journal:  PLoS Comput Biol       Date:  2013-05-16       Impact factor: 4.475

10.  Human germline antibody gene segments encode polyspecific antibodies.

Authors:  Jordan R Willis; Bryan S Briney; Samuel L DeLuca; James E Crowe; Jens Meiler
Journal:  PLoS Comput Biol       Date:  2013-04-25       Impact factor: 4.475

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