Literature DB >> 15858039

Identification of a peach latent mosaic viroid hairpin able to act as a Dicer-like substrate.

Patricia Landry1, Jean-Pierre Perreault.   

Abstract

The ability of several viroids to induce posttranscriptional gene silencing has been demonstrated; however, the structure recognized by the Dicer enzyme(s) responsible for the initiation of this mechanism remains a mystery. Here, we show that the hairpin known to be implicated in the replication of peach latent mosaic viroid has the ability to trigger the Dicer enzyme(s). This domain, which is composed of a succession of several small stems separated by symmetrical bulges, is reminiscent of the precursor micro-RNAs.

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Year:  2005        PMID: 15858039      PMCID: PMC1091732          DOI: 10.1128/JVI.79.10.6540-6543.2005

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  20 in total

1.  RNA interference is mediated by 21- and 22-nucleotide RNAs.

Authors:  S M Elbashir; W Lendeckel; T Tuschl
Journal:  Genes Dev       Date:  2001-01-15       Impact factor: 11.361

Review 2.  Gene silencing as an adaptive defence against viruses.

Authors:  P M Waterhouse; M B Wang; T Lough
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

3.  Delta ribozyme benefits from a good stability in vitro that becomes outstanding in vivo.

Authors:  Dominique Lévesque; Sanaa Choufani; Jean-Pierre Perreault
Journal:  RNA       Date:  2002-04       Impact factor: 4.942

4.  Two chloroplastic viroids induce the accumulation of small RNAs associated with posttranscriptional gene silencing.

Authors:  A E Martínez de Alba; R Flores; C Hernández
Journal:  J Virol       Date:  2002-12       Impact factor: 5.103

5.  The specifics of small interfering RNA specificity.

Authors:  Andrew Dillin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-16       Impact factor: 11.205

6.  A biochemical framework for RNA silencing in plants.

Authors:  Guiliang Tang; Brenda J Reinhart; David P Bartel; Phillip D Zamore
Journal:  Genes Dev       Date:  2003-01-01       Impact factor: 11.361

7.  Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure.

Authors:  F Bussière; J Ouellet; F Côté; D Lévesque; J P Perreault
Journal:  J Virol       Date:  2000-03       Impact factor: 5.103

8.  Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of post-transcriptional gene silencing.

Authors:  I Papaefthimiou; A Hamilton; M Denti; D Baulcombe; M Tsagris; M Tabler
Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

9.  Subcellular localization and rolling circle replication of peach latent mosaic viroid: hallmarks of group A viroids.

Authors:  F Bussière; J Lehoux; D A Thompson; L J Skrzeczkowski; J Perreault
Journal:  J Virol       Date:  1999-08       Impact factor: 5.103

10.  Potato spindle tuber viroid as inducer of RNA silencing in infected tomato.

Authors:  A Itaya; A Folimonov; Y Matsuda; R S Nelson; B Ding
Journal:  Mol Plant Microbe Interact       Date:  2001-11       Impact factor: 4.171

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  6 in total

1.  A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

Authors:  Asuka Itaya; Xuehua Zhong; Ralf Bundschuh; Yijun Qi; Ying Wang; Ryuta Takeda; Ann R Harris; Carlos Molina; Richard S Nelson; Biao Ding
Journal:  J Virol       Date:  2007-01-03       Impact factor: 5.103

Review 2.  What has been happening with viroids?

Authors:  Peter Palukaitis
Journal:  Virus Genes       Date:  2014-08-28       Impact factor: 2.332

3.  In-depth sequencing of the siRNAs associated with peach latent mosaic viroid infection.

Authors:  François Bolduc; Christopher Hoareau; Patrick St-Pierre; Jean-Pierre Perreault
Journal:  BMC Mol Biol       Date:  2010-02-16       Impact factor: 2.946

4.  Viroid pathogenicity: one process, many faces.

Authors:  Robert A Owens; Rosemarie W Hammond
Journal:  Viruses       Date:  2009-09-10       Impact factor: 5.048

5.  Deep sequencing of the small RNAs derived from two symptomatic variants of a chloroplastic viroid: implications for their genesis and for pathogenesis.

Authors:  Francesco Di Serio; Andreas Gisel; Beatriz Navarro; Sonia Delgado; Angel-Emilio Martínez de Alba; Giacinto Donvito; Ricardo Flores
Journal:  PLoS One       Date:  2009-10-21       Impact factor: 3.240

6.  HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR.

Authors:  Zachary Klase; Prachee Kale; Rafael Winograd; Madhur V Gupta; Mohammad Heydarian; Reem Berro; Timothy McCaffrey; Fatah Kashanchi
Journal:  BMC Mol Biol       Date:  2007-07-30       Impact factor: 2.946

  6 in total

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