Literature DB >> 15853794

Protein families and RNA recognition.

Yu Chen1, Gabriele Varani.   

Abstract

This minireview series examines the structural principles underlying the biological function of RNA-binding proteins. The structural work of the last decade has elucidated the structures of essentially all the major RNA-binding protein families; it has also demonstrated how RNA recognition takes place. The ribosome structures have further integrated this knowledge into principles for the assembly of complex ribonucleoproteins. Structural and biochemical work has revealed unexpectedly that several RNA-binding proteins bind to other proteins in addition to RNA or instead of RNA. This tremendous increase in the structural knowledge has expanded not only our understanding of the RNA recognition principle, but has also provided new insight into the biological function of these proteins and has helped to design better experiments to understand their biological roles.

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Year:  2005        PMID: 15853794     DOI: 10.1111/j.1742-4658.2005.04650.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  58 in total

Review 1.  The mysterious RAMP proteins and their roles in small RNA-based immunity.

Authors:  Ruiying Wang; Hong Li
Journal:  Protein Sci       Date:  2012-04       Impact factor: 6.725

2.  Multiple RNA binding domains of Bruno confer recognition of diverse binding sites for translational repression.

Authors:  Brad Reveal; Carlos Garcia; Andrew Ellington; Paul M Macdonald
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

3.  EgRBP42 encoding an hnRNP-like RNA-binding protein from Elaeis guineensis Jacq. is responsive to abiotic stresses.

Authors:  Wan-Chin Yeap; Tony Eng Keong Ooi; Parameswari Namasivayam; Harikrishna Kulaveerasingam; Chai-Ling Ho
Journal:  Plant Cell Rep       Date:  2012-06-15       Impact factor: 4.570

4.  Conformational distributions at the N-peptide/boxB RNA interface studied using site-directed spin labeling.

Authors:  Xiaojun Zhang; Sang Won Lee; Liang Zhao; Tianbing Xia; Peter Z Qin
Journal:  RNA       Date:  2010-10-27       Impact factor: 4.942

5.  Prediction of RNA binding sites in proteins from amino acid sequence.

Authors:  Michael Terribilini; Jae-Hyung Lee; Changhui Yan; Robert L Jernigan; Vasant Honavar; Drena Dobbs
Journal:  RNA       Date:  2006-06-21       Impact factor: 4.942

6.  A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations.

Authors:  Bethany L Kormos; Anne M Baranger; David L Beveridge
Journal:  J Struct Biol       Date:  2006-11-10       Impact factor: 2.867

Review 7.  Hepatitis B virus replication.

Authors:  Juergen Beck; Michael Nassal
Journal:  World J Gastroenterol       Date:  2007-01-07       Impact factor: 5.742

8.  Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.

Authors:  Hongbo Xie; Slobodan Vucetic; Lilia M Iakoucheva; Christopher J Oldfield; A Keith Dunker; Vladimir N Uversky; Zoran Obradovic
Journal:  J Proteome Res       Date:  2007-03-29       Impact factor: 4.466

Review 9.  Adenovirus E1B 55-kilodalton protein: multiple roles in viral infection and cell transformation.

Authors:  Andrew N Blackford; Roger J A Grand
Journal:  J Virol       Date:  2009-02-11       Impact factor: 5.103

10.  Specific and non-specific protein association in solution: computation of solvent effects and prediction of first-encounter modes for efficient configurational bias Monte Carlo simulations.

Authors:  Antonio Cardone; Harish Pant; Sergio A Hassan
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

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