Literature DB >> 1584789

The Escherichia coli chromosome contains specific, unmethylated dam and dcm sites.

S Ringquist1, C L Smith.   

Abstract

The Escherichia coli chromosome encodes two methylases, dam and dcm, which recognize the sequences GATC and CC(A/T)GG, respectively. Specific dam and dcm sites on the E. coli chromosome were found to be unmethylated in vivo by using pulsed-filed gel electrophoresis experiments scanning megabase regions of DNA. Some sites were totally unmethylated. The dam sites display variable methylation depending on the local sequence, and, in general, their methylation shows complex modulation by growth conditions and growth rate, suggesting multiple protection mechanisms. Sites resistant to complete dam or dcm methylation appear to be distributed throughout the chromosome. These unusual sites may identify regions of the chromosome with interesting biological functions.

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Year:  1992        PMID: 1584789      PMCID: PMC49118          DOI: 10.1073/pnas.89.10.4539

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Timing and targeting: the biological functions of Dam methylation in E. coli.

Authors:  W Messer; M Noyer-Weidner
Journal:  Cell       Date:  1988-09-09       Impact factor: 41.582

Review 2.  Evidence that adenine methylation influences DNA-protein interactions in Escherichia coli.

Authors:  N Sternberg
Journal:  J Bacteriol       Date:  1985-10       Impact factor: 3.490

3.  IS10 transposition is regulated by DNA adenine methylation.

Authors:  D Roberts; B C Hoopes; W R McClure; N Kleckner
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

4.  Hemimethylation prevents DNA replication in E. coli.

Authors:  D W Russell; N D Zinder
Journal:  Cell       Date:  1987-09-25       Impact factor: 41.582

5.  The replicative origin of the E. coli chromosome binds to cell membranes only when hemimethylated.

Authors:  G B Ogden; M J Pratt; M Schaechter
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

6.  Evidence for a methylation-blocking factor (mbf) locus involved in pap pilus expression and phase variation in Escherichia coli.

Authors:  B A Braaten; L B Blyn; B S Skinner; D A Low
Journal:  J Bacteriol       Date:  1991-03       Impact factor: 3.490

7.  Analysis of gene control signals by DNA fusion and cloning in Escherichia coli.

Authors:  M J Casadaban; S N Cohen
Journal:  J Mol Biol       Date:  1980-04       Impact factor: 5.469

8.  Arrangement of Dam methylation sites (GATC) in the Escherichia coli chromosome.

Authors:  F Barras; M G Marinus
Journal:  Nucleic Acids Res       Date:  1988-10-25       Impact factor: 16.971

9.  Cloning and characterization of the dcm locus of Escherichia coli K-12.

Authors:  A S Bhagwat; A Sohail; R J Roberts
Journal:  J Bacteriol       Date:  1986-06       Impact factor: 3.490

10.  The Escherichia coli regulatory protein OxyR discriminates between methylated and unmethylated states of the phage Mu mom promoter.

Authors:  M Bölker; R Kahmann
Journal:  EMBO J       Date:  1989-08       Impact factor: 11.598

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  36 in total

Review 1.  Roles of DNA adenine methylation in regulating bacterial gene expression and virulence.

Authors:  D A Low; N J Weyand; M J Mahan
Journal:  Infect Immun       Date:  2001-12       Impact factor: 3.441

2.  A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex.

Authors:  Noriko Takahashi; Yasuhiro Naito; Naofumi Handa; Ichizo Kobayashi
Journal:  J Bacteriol       Date:  2002-11       Impact factor: 3.490

3.  Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1.

Authors:  Matthew L Bendall; Khai Luong; Kelly M Wetmore; Matthew Blow; Jonas Korlach; Adam Deutschbauer; Rex R Malmstrom
Journal:  J Bacteriol       Date:  2013-08-30       Impact factor: 3.490

4.  Altered levels of Salmonella DNA adenine methylase are associated with defects in gene expression, motility, flagellar synthesis, and bile resistance in the pathogenic strain 14028 but not in the laboratory strain LT2.

Authors:  Golnaz Badie; Douglas M Heithoff; Robert L Sinsheimer; Michael J Mahan
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

5.  Proximal recognition sites facilitate intrasite hopping by DNA adenine methyltransferase: mechanistic exploration of epigenetic gene regulation.

Authors:  Adam J Pollak; Norbert O Reich
Journal:  J Biol Chem       Date:  2012-05-07       Impact factor: 5.157

Review 6.  Programmed heterogeneity: epigenetic mechanisms in bacteria.

Authors:  Josep Casadesús; David A Low
Journal:  J Biol Chem       Date:  2013-04-16       Impact factor: 5.157

Review 7.  Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more.

Authors:  Martin G Marinus; Josep Casadesus
Journal:  FEMS Microbiol Rev       Date:  2009-01-19       Impact factor: 16.408

8.  Both an altered DNA structure and cellular proteins are involved in protecting a triplex forming an oligopurine-rich sequence from Dam methylation in E. coli.

Authors:  J Klysik
Journal:  Biochem Genet       Date:  1996-06       Impact factor: 1.890

9.  Whole methylome analysis by ultra-deep sequencing using two-base encoding.

Authors:  Christina A Bormann Chung; Victoria L Boyd; Kevin J McKernan; Yutao Fu; Cinna Monighetti; Heather E Peckham; Melissa Barker
Journal:  PLoS One       Date:  2010-02-22       Impact factor: 3.240

10.  Methylated cytosine at Dcm (CCATGG) sites in Escherichia coli: possible function and evolutionary implications.

Authors:  M C Gómez-Eichelmann; J Ramírez-Santos
Journal:  J Mol Evol       Date:  1993-07       Impact factor: 2.395

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