Literature DB >> 15847514

A linear-scaling self-consistent generalization of the multistate empirical valence bond method for multiple excess protons in aqueous systems.

Feng Wang1, Gregory A Voth.   

Abstract

An extension to the multistate empirical valence bond (MS-EVB) method is presented in this paper that is capable of treating multiple excess protons within the context of molecular-dynamics simulation. The computational cost of the method scales linearly with respect to the number of excess protons. Calculations for a 0.44 M HCl systems are carried out to illustrate the multiproton extension of the MS-EVB method. A significant decrease in the Eigen-type H(9)O(4)(+) cation is observed in the contact ion-pair configuration formed between Cl(-) and hydronium ions.

Entities:  

Year:  2005        PMID: 15847514     DOI: 10.1063/1.1881092

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Charge delocalization in proton channels, I: the aquaporin channels and proton blockage.

Authors:  Hanning Chen; Boaz Ilan; Yujie Wu; Fangqiang Zhu; Klaus Schulten; Gregory A Voth
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

Review 2.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

3.  Classical Molecular Dynamics with Mobile Protons.

Authors:  Themis Lazaridis; Gerhard Hummer
Journal:  J Chem Inf Model       Date:  2017-11-14       Impact factor: 4.956

4.  Expanding the view of proton pumping in cytochrome c oxidase through computer simulation.

Authors:  Yuxing Peng; Gregory A Voth
Journal:  Biochim Biophys Acta       Date:  2011-12-08

5.  On the construction of diabatic and adiabatic potential energy surfaces based on ab initio valence bond theory.

Authors:  Lingchun Song; Jiali Gao
Journal:  J Phys Chem A       Date:  2008-12-18       Impact factor: 2.781

6.  Computationally Efficient Multiconfigurational Reactive Molecular Dynamics.

Authors:  Takefumi Yamashita; Yuxing Peng; Chris Knight; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2012-12-11       Impact factor: 6.006

  6 in total

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