Literature DB >> 15847471

Systematic ab initio studies of the conformers and conformational distribution of gas-phase tyrosine.

Meiling Zhang1, Zhijian Huang, Zijing Lin.   

Abstract

A full structural assignment of the conformers of gaseous tyrosine is presented. A total of 1296 unique trial structures were generated by allowing for all combinations of internal single-bond rotamers and optimized at the B3LYP6-311G* level of theory and then subjected to further optimization at the B3LYP6-311++G** level. A total of 76 conformers are found and their dipole moments, rotational constants, and harmonic frequencies are determined. Accurate relative energies are given at the MP26-311G(2df,p)B3LYP6-311++G** level of theory. Characteristic H-bonding types are classified and listed for all the conformers. The four most stable conformers display an intramolecular H bond, COOH...NH(2), and an additional H-bonding interaction between the amino group and pi electron of the aromatic ring. The results further confirm that the global minimum conformations of the aromatic amino acids have the same H-bonding type. Combined with statistical mechanics principles, conformational distributions at various temperatures are computed and the temperatures with which the theoretical results match that of experiments are indicated.

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Year:  2005        PMID: 15847471     DOI: 10.1063/1.1869471

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  A quantum chemical study of repair of O6-methylguanine to guanine by tyrosine: evaluation of the winged helix-turn-helix model.

Authors:  Saumya Tiwari; Phool Chand Mishra
Journal:  J Mol Model       Date:  2009-05-07       Impact factor: 1.810

2.  Comprehensive conformational studies of five tripeptides and a deduced method for efficient determinations of peptide structures.

Authors:  Wenbo Yu; Zhiqing Wu; Huibin Chen; Xu Liu; Alexander D MacKerell; Zijing Lin
Journal:  J Phys Chem B       Date:  2012-02-10       Impact factor: 2.991

3.  Environment influences on the aromatic character of nucleobases and amino acids.

Authors:  Piotr Cysewski; Beata Szefler
Journal:  J Mol Model       Date:  2010-07-29       Impact factor: 1.810

4.  Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers.

Authors:  Joanna E Rode; Jan Cz Dobrowolski; Joanna Sadlej
Journal:  J Mol Model       Date:  2010-07-11       Impact factor: 1.810

5.  First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids.

Authors:  Matti Ropo; Markus Schneider; Carsten Baldauf; Volker Blum
Journal:  Sci Data       Date:  2016-02-16       Impact factor: 6.444

6.  TorsiFlex: an automatic generator of torsional conformers. Application to the twenty proteinogenic amino acids.

Authors:  David Ferro-Costas; Irea Mosquera-Lois; Antonio Fernández-Ramos
Journal:  J Cheminform       Date:  2021-12-24       Impact factor: 8.489

  6 in total

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