Literature DB >> 15840832

Unfolding crystallins: the destabilizing role of a beta-hairpin cysteine in betaB2-crystallin by simulation and experiment.

James T MacDonald1, Andrew G Purkiss, Myron A Smith, Paul Evans, Julia M Goodfellow, Christine Slingsby.   

Abstract

The thermodynamic and kinetic stabilities of the eye lens family of betagamma-crystallins are important factors in the etiology of senile cataract. They control the chance of proteins unfolding, which can lead to aggregation and loss of transparency. betaB2-Crystallin orthologs are of low stability and comprise two typical betagamma-crystallin domains, although, uniquely, the N-terminal domain has a cysteine in one of the conserved folded beta-hairpins. Using high-temperature (500 K) molecular dynamics simulations with explicit solvent on the N-terminal domain of rodent betaB2-crystallin, we have identified in silico local flexibility in this folded beta-hairpin. We have shown in vitro using two-domain human betaB2-crystallin that replacement of this cysteine with a more usual aromatic residue (phenylalanine) results in a gain in conformational stability and a reduction in the rate of unfolding. We have used principal components analysis to visualize and cluster the coordinates from eight separate simulated unfolding trajectories of both the wild-type and the C50F mutant N-terminal domains. These data, representing fluctuations around the native well, show that although the mutant and wild-type appear to behave similarly over the early time period, the wild type appears to explore a different region of conformational space. It is proposed that the advantage of having this low-stability cysteine may be correlated with a subunit-exchange mechanism that allows betaB2-crystallin to interact with a range of other beta-crystallin subunits.

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Year:  2005        PMID: 15840832      PMCID: PMC2253261          DOI: 10.1110/ps.041227805

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  37 in total

Review 1.  Small heat-shock proteins and their potential role in human disease.

Authors:  J I Clark; P J Muchowski
Journal:  Curr Opin Struct Biol       Date:  2000-02       Impact factor: 6.809

2.  Resistance of human betaB2-crystallin to in vivo modification.

Authors:  Z Zhang; L L David; D L Smith; J B Smith
Journal:  Exp Eye Res       Date:  2001-08       Impact factor: 3.467

3.  Association behaviour of human betaB1-crystallin and its truncated forms.

Authors:  O A Bateman; N H Lubsen; C Slingsby
Journal:  Exp Eye Res       Date:  2001-09       Impact factor: 3.467

4.  Crystal structure of truncated human betaB1-crystallin.

Authors:  Rob L M Van Montfort; Orval A Bateman; Nicolette H Lubsen; Christine Slingsby
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

5.  Binding of destabilized betaB2-crystallin mutants to alpha-crystallin: the role of a folding intermediate.

Authors:  Hasige A Sathish; Hanane A Koteiche; Hassane S McHaourab
Journal:  J Biol Chem       Date:  2004-02-03       Impact factor: 5.157

Review 6.  The topomer search model: A simple, quantitative theory of two-state protein folding kinetics.

Authors:  Dmitrii E Makarov; Kevin W Plaxco
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

7.  Deamidation, but not truncation, decreases the urea stability of a lens structural protein, betaB1-crystallin.

Authors:  Yung Hae Kim; Deborah M Kapfer; Jos Boekhorst; Nicolette H Lubsen; Hans Peter Bächinger; Thomas R Shearer; Larry L David; Jimmy B Feix; Kirsten J Lampi
Journal:  Biochemistry       Date:  2002-11-26       Impact factor: 3.162

8.  In vitro unfolding, refolding, and polymerization of human gammaD crystallin, a protein involved in cataract formation.

Authors:  Melissa S Kosinski-Collins; Jonathan King
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

9.  The stability of human acidic beta-crystallin oligomers and hetero-oligomers.

Authors:  O A Bateman; R Sarra; S T van Genesen; G Kappé; N H Lubsen; C Slingsby
Journal:  Exp Eye Res       Date:  2003-10       Impact factor: 3.467

10.  Use of essential and molecular dynamics to study gammaB-crystallin unfolding after non-enzymic post-translational modifications.

Authors:  M James C Crabbe; Lee R Cooper; David W Corne
Journal:  Comput Biol Chem       Date:  2003-10       Impact factor: 2.877

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  15 in total

1.  Engineered disulfide bonds restore chaperone-like function of DJ-1 mutants linked to familial Parkinson's disease.

Authors:  Todd Logan; Lindsay Clark; Soumya S Ray
Journal:  Biochemistry       Date:  2010-07-13       Impact factor: 3.162

2.  Folding and stability of the isolated Greek key domains of the long-lived human lens proteins gammaD-crystallin and gammaS-crystallin.

Authors:  Ishara A Mills; Shannon L Flaugh; Melissa S Kosinski-Collins; Jonathan A King
Journal:  Protein Sci       Date:  2007-09-28       Impact factor: 6.725

3.  Deamidation in human lens betaB2-crystallin destabilizes the dimer.

Authors:  Kirsten J Lampi; Kencee K Amyx; Petra Ahmann; Eric A Steel
Journal:  Biochemistry       Date:  2006-03-14       Impact factor: 3.162

4.  A conserved phenylalanine of motif IV in superfamily 2 helicases is required for cooperative, ATP-dependent binding of RNA substrates in DEAD-box proteins.

Authors:  Josette Banroques; Olivier Cordin; Monique Doère; Patrick Linder; N Kyle Tanner
Journal:  Mol Cell Biol       Date:  2008-03-10       Impact factor: 4.272

5.  The role of macromolecular crowding in the evolution of lens crystallins with high molecular refractive index.

Authors:  Huaying Zhao; M Teresa Magone; Peter Schuck
Journal:  Phys Biol       Date:  2011-05-12       Impact factor: 2.583

Review 6.  Lens β-crystallins: the role of deamidation and related modifications in aging and cataract.

Authors:  Kirsten J Lampi; Phillip A Wilmarth; Matthew R Murray; Larry L David
Journal:  Prog Biophys Mol Biol       Date:  2014-03-06       Impact factor: 3.667

7.  Aggregation of deamidated human betaB2-crystallin and incomplete rescue by alpha-crystallin chaperone.

Authors:  Magalie Michiel; Elodie Duprat; Fériel Skouri-Panet; Jason A Lampi; Annette Tardieu; Kirsten J Lampi; Stéphanie Finet
Journal:  Exp Eye Res       Date:  2010-02-23       Impact factor: 3.467

8.  Contributions of aromatic pairs to the folding and stability of long-lived human γD-crystallin.

Authors:  Fanrong Kong; Jonathan King
Journal:  Protein Sci       Date:  2011-03       Impact factor: 6.725

Review 9.  Functions of crystallins in and out of lens: roles in elongated and post-mitotic cells.

Authors:  Christine Slingsby; Graeme J Wistow
Journal:  Prog Biophys Mol Biol       Date:  2014-02-28       Impact factor: 3.667

10.  Deamidation alters the structure and decreases the stability of human lens betaA3-crystallin.

Authors:  Takumi Takata; Julie T Oxford; Theodore R Brandon; Kirsten J Lampi
Journal:  Biochemistry       Date:  2007-07-07       Impact factor: 3.162

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