Literature DB >> 15840708

Meta-DP: domain prediction meta-server.

Harpreet Kaur Saini1, Daniel Fischer.   

Abstract

UNLABELLED: Meta-DP, a domain prediction meta-server provides a simple interface to predict domains in a given protein sequence using a number of domain prediction methods. The Meta-DP is a convenient resource because through accessing a single site, users automatically obtain the results of the various domain prediction methods along with a consensus prediction. The Meta-DP is currently coupled to 10 domain prediction servers and can be extended to include any number of methods. Meta-DP can thus become a centralized repository of available methods. Meta-DP was also used to evaluate the performance of 13 domain prediction methods in the context of CAFASP-DP. AVAILABILITY: The Meta-DP server is freely available at http://meta-dp.bioinformatics.buffalo.edu and the CAFASP-DP evaluation results are available at http://cafasp4.bioinformatics.buffalo.edu/dp/update.html CONTACT: hkaur@bioinformatics.buffalo.edu SUPPLEMENTARY INFORMATION: Available at http://cafasp4.bioinformatics.buffalo.edu/dp/update.html.

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Year:  2005        PMID: 15840708     DOI: 10.1093/bioinformatics/bti445

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  17 in total

1.  EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.

Authors:  Jianjun Hu; Yifeng D Yang; Daisuke Kihara
Journal:  BMC Bioinformatics       Date:  2006-07-13       Impact factor: 3.169

2.  DomSVR: domain boundary prediction with support vector regression from sequence information alone.

Authors:  Peng Chen; Chunmei Liu; Legand Burge; Jinyan Li; Mahmood Mohammad; William Southerland; Clay Gloster; Bing Wang
Journal:  Amino Acids       Date:  2010-02-18       Impact factor: 3.520

3.  OPUS-Dom: applying the folding-based method VECFOLD to determine protein domain boundaries.

Authors:  Yinghao Wu; Athanasios D Dousis; Mingzhi Chen; Jialin Li; Jianpeng Ma
Journal:  J Mol Biol       Date:  2008-11-10       Impact factor: 5.469

4.  An interrupted beta-propeller and protein disorder: structural bioinformatics insights into the N-terminus of alsin.

Authors:  Dinesh C Soares; Paul N Barlow; David J Porteous; Rebecca S Devon
Journal:  J Mol Model       Date:  2008-11-21       Impact factor: 1.810

5.  MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins.

Authors:  Lukasz P Kozlowski; Janusz M Bujnicki
Journal:  BMC Bioinformatics       Date:  2012-05-24       Impact factor: 3.169

6.  A framework for protein structure classification and identification of novel protein structures.

Authors:  You Jung Kim; Jignesh M Patel
Journal:  BMC Bioinformatics       Date:  2006-10-16       Impact factor: 3.169

7.  KemaDom: a web server for domain prediction using kernel machine with local context.

Authors:  Lusheng Chen; Wei Wang; Shaoping Ling; Caiyan Jia; Fei Wang
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

8.  DOMAC: an accurate, hybrid protein domain prediction server.

Authors:  Jianlin Cheng
Journal:  Nucleic Acids Res       Date:  2007-06-06       Impact factor: 16.971

9.  Protein domain boundary predictions: a structural biology perspective.

Authors:  Svetlana Kirillova; Suresh Kumar; Oliviero Carugo
Journal:  Open Biochem J       Date:  2009-01-21

10.  Structural and functional insights into Mimivirus ORFans.

Authors:  Harpreet Kaur Saini; Daniel Fischer
Journal:  BMC Genomics       Date:  2007-05-09       Impact factor: 3.969

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