Literature DB >> 15840701

A web-based three-dimensional protein retrieval system by matching visual similarity.

Jeng-Sheng Yeh1, Ding-Yun Chen, Bing-Yu Chen, Ming Ouhyoung.   

Abstract

SUMMARY: A web-based three-dimensional (3D) protein retrieval system is available for protein structure data including all PDB and FSSP dataset. In this system, we use a visual-based matching method to compare the protein structure from multiple viewpoints. It takes less than three seconds for each query with 90% accuracy on an average.

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Year:  2005        PMID: 15840701     DOI: 10.1093/bioinformatics/bti458

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  3D-SURFER: software for high-throughput protein surface comparison and analysis.

Authors:  David La; Juan Esquivel-Rodríguez; Vishwesh Venkatraman; Bin Li; Lee Sael; Stephen Ueng; Steven Ahrendt; Daisuke Kihara
Journal:  Bioinformatics       Date:  2009-09-16       Impact factor: 6.937

2.  IDSS: deformation invariant signatures for molecular shape comparison.

Authors:  Yu-Shen Liu; Yi Fang; Karthik Ramani
Journal:  BMC Bioinformatics       Date:  2009-05-22       Impact factor: 3.169

3.  3DMolNavi: a web-based retrieval and navigation tool for flexible molecular shape comparison.

Authors:  Yu-Shen Liu; Meng Wang; Jean-Claude Paul; Karthik Ramani
Journal:  BMC Bioinformatics       Date:  2012-05-14       Impact factor: 3.169

4.  Using diffusion distances for flexible molecular shape comparison.

Authors:  Yu-Shen Liu; Qi Li; Guo-Qin Zheng; Karthik Ramani; William Benjamin
Journal:  BMC Bioinformatics       Date:  2010-09-24       Impact factor: 3.169

5.  A method of protein model classification and retrieval using bag-of-visual-features.

Authors:  Jinlin Ma; Ziping Ma; Baosheng Kang; Ke Lu
Journal:  Comput Math Methods Med       Date:  2014-09-01       Impact factor: 2.238

6.  Layers: A molecular surface peeling algorithm and its applications to analyze protein structures.

Authors:  Naga Bhushana Rao Karampudi; Ranjit Prasad Bahadur
Journal:  Sci Rep       Date:  2015-11-10       Impact factor: 4.379

7.  Selection of computational environments for PSP processing on scientific gateways.

Authors:  Edvard Martins de Oliveira; Júlio Cézar Estrella; Alexandre Cláudio Botazzo Delbem; Luiz Henrique Nunes; Henrique Yoshikazu Shishido; Stephan Reiff-Marganiec
Journal:  Heliyon       Date:  2018-07-17
  7 in total

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