Literature DB >> 15839682

Toward identification of the compound I reactive intermediate in cytochrome P450 chemistry: a QM/MM study of its EPR and Mössbauer parameters.

Jan C Schöneboom1, Frank Neese, Walter Thiel.   

Abstract

Quantum mechanical/molecular mechanical (QM/MM) methods have been used in conjunction with density functional theory (DFT) and correlated ab initio methods to predict the electron paramagnetic resonance (EPR) and Mossbauer (MB) properties of Compound I in P450(cam). For calibration purposes, a small Fe(IV)-oxo complex [Fe(O)(NH(3))(4)(H(2)O)](2+) was studied. The (3)A(2) and (5)A(1) states (in C(4)(v)() symmetry) are found to be within 0.1-0.2 eV. The large zero-field splitting (ZFS) of the (FeO)(2+) unit in the (3)A(2) state arises from spin-orbit coupling with the low-lying quintet and singlet states. The intrinsic g-anisotropy is very small. The spectroscopic properties of the model complex [Fe(O)(TMC)(CH(3)CN)](2+) (TMC = 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane) are well reproduced by theory. In the model complexes [Fe(O)(TMP)(X)](+) (TMP = tetramesitylporphyrin, X = nothing or H(2)O) the computations again account for the observed spectroscopic properties and predict that the coupling of the (5)A(1) state of the (FeO)(2+) unit to the porphyrin radical leads to a low-lying sextet/quartet manifold approximately 12 kcal/mol above the quartet ground state. The calculations on cytochrome P450(cam), with and without the simulation of the protein environment by point charges, predict a small antiferromagnetic coupling (J approximately -13 to -16 cm(-)(1); H(HDvV) = - 2JS(A)S(B)) and a large ZFS > 15 cm(-)(1) (with E/D approximately 1/3) which will compete with the exchange coupling. This leads to three Kramers doublets of mixed multiplicity which are all populated at room temperature and may therefore contribute to the observed reactivity. The MB and ligand hyperfine couplings ((14)N, (1)H) are fairly sensitive to the protein environment which controls the spin density distribution between the porphyrin ring and the axial cysteinate ligand.

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Year:  2005        PMID: 15839682     DOI: 10.1021/ja0424732

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  The hydrogen catalyst cobaloxime: a multifrequency EPR and DFT study of cobaloxime's electronic structure.

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Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

2.  A critical evaluation of DFT, including time-dependent DFT, applied to bioinorganic chemistry.

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Journal:  J Biol Inorg Chem       Date:  2006-07-05       Impact factor: 3.358

3.  Steric hindrance effect of the equatorial ligand on Fe(IV)O and Ru(IV)O complexes: a density functional study.

Authors:  Yi Wang; Keli Han
Journal:  J Biol Inorg Chem       Date:  2010-03       Impact factor: 3.358

4.  A GGA+U approach to effective electronic correlations in thiolate-ligated iron-oxo (IV) porphyrin.

Authors:  Justin E Elenewski; John C Hackett
Journal:  J Chem Phys       Date:  2012-09-28       Impact factor: 3.488

5.  Activation of a water molecule using a mononuclear Mn complex: from Mn-aquo, to Mn-hydroxo, to Mn-oxyl via charge compensation.

Authors:  Benedikt Lassalle-Kaiser; Christelle Hureau; Dimitrios A Pantazis; Yulia Pushkar; Régis Guillot; Vittal K Yachandra; Junko Yano; Frank Neese; Elodie Anxolabéhère-Mallart
Journal:  Energy Environ Sci       Date:  2010-07-01       Impact factor: 38.532

6.  Cytochrome P450 compound I in the plane wave pseudopotential framework: GGA electronic and geometric structure of thiolate-ligated iron(IV)-oxo porphyrin.

Authors:  Justin E Elenewski; John C Hackett
Journal:  J Comput Chem       Date:  2013-05-14       Impact factor: 3.376

7.  QM/MM study of the active species of the human cytochrome P450 3A4, and the influence thereof of the multiple substrate binding.

Authors:  Dan Fishelovitch; Carina Hazan; Hajime Hirao; Haim J Wolfson; Ruth Nussinov; Sason Shaik
Journal:  J Phys Chem B       Date:  2007-11-17       Impact factor: 2.991

Review 8.  Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms.

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Journal:  J Chem Inf Model       Date:  2012-02-17       Impact factor: 4.956

9.  The catalytic Mn2+ sites in the enolase-inhibitor complex: crystallography, single-crystal EPR, and DFT calculations.

Authors:  Raanan Carmieli; Todd M Larsen; George H Reed; Samir Zein; Frank Neese; Daniella Goldfarb
Journal:  J Am Chem Soc       Date:  2007-03-17       Impact factor: 15.419

Review 10.  Density functional theory.

Authors:  Maylis Orio; Dimitrios A Pantazis; Frank Neese
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

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