Literature DB >> 15837189

Peach: a simple Perl-based system for distributed computation and its application to cryo-EM data processing.

Peter A Leong1, J Bernard Heymann, Grant J Jensen.   

Abstract

A simple distributed processing system named "Peach" was developed to meet the rising computational demands of modern structural biology (and other) laboratories without additional expense by using existing hardware resources more efficiently. A central server distributes jobs to idle workstations in such a way that each computer is used maximally, but without disturbing intermittent interactive users. As compared to other distributed systems, Peach is simple, easy to install, easy to administer, easy to use, scalable, and robust. While it was designed to queue and distribute large numbers of small tasks to participating computers, it can also be used to send single jobs automatically to the fastest currently available computer and/or survey the activity of an entire laboratory's computers. Tests of robustness and scalability are reported, as are three specific electron cryomicroscopy applications where Peach enabled projects that would not otherwise have been feasible without an expensive, dedicated cluster.

Entities:  

Mesh:

Year:  2005        PMID: 15837189     DOI: 10.1016/j.str.2005.01.015

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  6 in total

1.  MamK, a bacterial actin, forms dynamic filaments in vivo that are regulated by the acidic proteins MamJ and LimJ.

Authors:  Olga Draper; Meghan E Byrne; Zhuo Li; Sepehr Keyhani; Joyce Cueto Barrozo; Grant Jensen; Arash Komeili
Journal:  Mol Microbiol       Date:  2011-09-14       Impact factor: 3.501

2.  Structural diversity of bacterial flagellar motors.

Authors:  Songye Chen; Morgan Beeby; Gavin E Murphy; Jared R Leadbetter; David R Hendrixson; Ariane Briegel; Zhuo Li; Jian Shi; Elitza I Tocheva; Axel Müller; Megan J Dobro; Grant J Jensen
Journal:  EMBO J       Date:  2011-06-14       Impact factor: 11.598

3.  Single particle reconstruction and validation using Bsoft for the map challenge.

Authors:  J Bernard Heymann
Journal:  J Struct Biol       Date:  2018-07-05       Impact factor: 2.867

4.  Protocols for Processing and Interpreting cryoEM Data Using Bsoft: A Case Study of the Retinal Adhesion Protein, Retinoschisin.

Authors:  J Bernard Heymann
Journal:  Bio Protoc       Date:  2020-01-20

5.  The Mottled Capsid of the Salmonella Giant Phage SPN3US, a Likely Maturation Intermediate with a Novel Internal Shell.

Authors:  J Bernard Heymann; Bing Wang; William W Newcomb; Weimin Wu; Dennis C Winkler; Naiqian Cheng; Erin R Reilly; Ru-Ching Hsia; Julie A Thomas; Alasdair C Steven
Journal:  Viruses       Date:  2020-08-19       Impact factor: 5.048

6.  3-D ultrastructure of O. tauri: electron cryotomography of an entire eukaryotic cell.

Authors:  Gregory P Henderson; Lu Gan; Grant J Jensen
Journal:  PLoS One       Date:  2007-08-15       Impact factor: 3.240

  6 in total

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