Literature DB >> 15836308

Optimizing the driving function for nonequilibrium free-energy calculations in the linear regime: a variational approach.

Maurice de Koning1.   

Abstract

We consider the issue of optimizing linear-regime nonequilibrium simulations to estimate free-energy differences. In particular, we focus on the problem of finding the best-possible driving function lambda(t) that, for a given thermodynamic path, simulation algorithm, and amount of computational effort, minimizes dissipation. From the fluctuation-dissipation theorem it follows that, in the linear-response regime, the dissipation is controlled by the magnitude and characteristic correlation time of the equilibrium fluctuations in the driving force. As a result, the problem of finding the optimal switching scheme involves the solution of a standard problem in variational calculus: the minimization of a functional with respect to the switching function. In practice, the minimization involves solving the associated Euler-Lagrange equation subject to a set of boundary conditions. As a demonstration we apply the approach to the simple, yet illustrative problem of computing the free-energy difference between two classical harmonic oscillators with very different characteristic frequencies.

Year:  2005        PMID: 15836308     DOI: 10.1063/1.1860556

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  2 in total

1.  Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise.

Authors:  Paul Maragakis; Felix Ritort; Carlos Bustamante; Martin Karplus; Gavin E Crooks
Journal:  J Chem Phys       Date:  2008-07-14       Impact factor: 3.488

2.  Efficiency in nonequilibrium molecular dynamics Monte Carlo simulations.

Authors:  Brian K Radak; Benoît Roux
Journal:  J Chem Phys       Date:  2016-10-07       Impact factor: 3.488

  2 in total

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