Literature DB >> 15836119

Operator splitting algorithm for isokinetic SLLOD molecular dynamics.

Guoai Pan1, James F Ely, Clare McCabe, Dennis J Isbister.   

Abstract

We apply an operator splitting method to develop a simulation algorithm that has complete analytical solutions for the Gaussian thermostated SLLOD equations of motion [D. J. Evans and G. P. Morriss, Phys. Rev. A 30, 1528 (1984)] for a system under shear. This leads to a homogeneous algorithm for performing both equilibrium and nonequilibrium isokinetic molecular dynamics simulation. The resulting algorithm is computationally efficient. In particular, larger integration time steps can be used compared to simulations with regular Gaussian thermostated SLLOD equations of motion. The utility and accuracy of the algorithm are demonstrated through application to the Weeks-Chandler-Anderson fluid. Although strict conservation of the kinetic energy suppresses thermal fluctuations in the system, this algorithm does not allow simulations at lower shear rates than those normally afforded by older nonequilibrium molecular dynamics simulations.

Year:  2005        PMID: 15836119     DOI: 10.1063/1.1858861

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  2 in total

1.  Viscosity of heptane-toluene mixtures. Comparison of molecular dynamics and group contribution methods.

Authors:  Ana Milena Velásquez; Bibian A Hoyos
Journal:  J Mol Model       Date:  2017-02-06       Impact factor: 1.810

2.  On the effect of the thermostat in non-equilibrium molecular dynamics simulations.

Authors:  José Ruiz-Franco; Lorenzo Rovigatti; Emanuela Zaccarelli
Journal:  Eur Phys J E Soft Matter       Date:  2018-07-02       Impact factor: 1.890

  2 in total

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