Literature DB >> 15832379

Concepts in nuclear architecture.

Tom Misteli1.   

Abstract

Genomes are defined by their primary sequence. The functional properties of genomes, however, are determined by far more complex mechanisms and depend on multiple layers of regulatory control processes. A key emerging contributor to genome function is the architectural organization of the cell nucleus. The spatial and temporal behavior of genomes and their regulatory proteins are now being recognized as important, yet still poorly understood, control mechanisms in genome function. Combined cell biological, molecular and computational analysis of architectural aspects of genome function has added a further dimension to the investigation of some of the most fundamental cellular processes including transcription and maintenance of genome integrity. The complete elucidation of the contribution that nuclear architecture makes to gene expression will be required to fully understand physiological processes such as differentiation, development and disease at the cellular level. Here I give an overview of some of the emerging concepts in the study of in vivo genome organization and function.

Mesh:

Year:  2005        PMID: 15832379     DOI: 10.1002/bies.20226

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  91 in total

1.  Changes in chromatin compaction during the cell cycle revealed by micrometer-scale measurement of molecular flow in the nucleus.

Authors:  Elizabeth Hinde; Francesco Cardarelli; Michelle A Digman; Enrico Gratton
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

2.  Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles.

Authors:  Ryu Miyagawa; Keiko Tano; Rie Mizuno; Yo Nakamura; Kenichi Ijiri; Randeep Rakwal; Junko Shibato; Yoshinori Masuo; Akila Mayeda; Tetsuro Hirose; Nobuyoshi Akimitsu
Journal:  RNA       Date:  2012-02-21       Impact factor: 4.942

3.  Magnetic manipulation of nanorods in the nucleus of living cells.

Authors:  Alfredo Celedon; Christopher M Hale; Denis Wirtz
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

4.  Twenty-four chromosome FISH in human IVF embryos reveals patterns of post-zygotic chromosome segregation and nuclear organisation.

Authors:  D Ioannou; K G L Fonseka; E J Meershoek; A R Thornhill; A Abogrein; M Ellis; D K Griffin
Journal:  Chromosome Res       Date:  2012-06-29       Impact factor: 5.239

5.  In vivo pair correlation analysis of EGFP intranuclear diffusion reveals DNA-dependent molecular flow.

Authors:  Elizabeth Hinde; Francesco Cardarelli; Michelle A Digman; Enrico Gratton
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-07       Impact factor: 11.205

6.  Proteomic analysis of fatty-acylated proteins in mammalian cells with chemical reporters reveals S-acylation of histone H3 variants.

Authors:  John P Wilson; Anuradha S Raghavan; Yu-Ying Yang; Guillaume Charron; Howard C Hang
Journal:  Mol Cell Proteomics       Date:  2010-11-14       Impact factor: 5.911

7.  Combining FISH with localisation microscopy: Super-resolution imaging of nuclear genome nanostructures.

Authors:  Yanina Weiland; Paul Lemmer; Christoph Cremer
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

8.  Reorganization of the interchromosomal network during keratinocyte differentiation.

Authors:  Nitasha Sehgal; Brandon Seifert; Hu Ding; Zihe Chen; Branislav Stojkovic; Sambit Bhattacharya; Jinhui Xu; Ronald Berezney
Journal:  Chromosoma       Date:  2015-10-21       Impact factor: 4.316

9.  Quantitative characterization of preneoplastic progression using single-cell computed tomography and three-dimensional karyometry.

Authors:  Vivek Nandakumar; Laimonas Kelbauskas; Roger Johnson; Deirdre Meldrum
Journal:  Cytometry A       Date:  2011-01       Impact factor: 4.355

Review 10.  Recent progress in histochemistry and cell biology: the state of the art 2005.

Authors:  Douglas J Taatjes; Jürgen Roth
Journal:  Histochem Cell Biol       Date:  2005-11-11       Impact factor: 4.304

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