Literature DB >> 15831383

Integrating genomics and metabolomics for engineering plant metabolic pathways.

Kirsi-Marja Oksman-Caldentey1, Kazuki Saito.   

Abstract

Plant metabolites are characterized by an enormous chemical diversity, every plant having its own complex set of metabolites. This variety poses analytical challenges, both for profiling multiple metabolites in parallel and for the quantitative analysis of selected metabolites. We are only just starting to understand the roles of these metabolites, many of them being involved in adaptations to specific ecological niches and some finding beneficial use (e.g. as pharmaceuticals). Spectacular advances in plant metabolomics offer new possibilities, together with the aid of systems biology, to explore the extraordinary complexity of the plant biochemical capacity. State-of-the art genomics tools can be combined with metabolic profiling to identify key genes that could be engineered for the production of improved crop plants.

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Year:  2005        PMID: 15831383     DOI: 10.1016/j.copbio.2005.02.007

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  30 in total

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Journal:  Plant Cell Physiol       Date:  2010-03-05       Impact factor: 4.927

2.  Elements required for an efficient NADP-malic enzyme type C4 photosynthesis.

Authors:  Yu Wang; Stephen P Long; Xin-Guang Zhu
Journal:  Plant Physiol       Date:  2014-02-12       Impact factor: 8.340

3.  Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-09       Impact factor: 11.205

4.  Plant MetGenMAP: an integrative analysis system for plant systems biology.

Authors:  Je-Gun Joung; Anthony M Corbett; Shanna Moore Fellman; Denise M Tieman; Harry J Klee; James J Giovannoni; Zhangjun Fei
Journal:  Plant Physiol       Date:  2009-10-09       Impact factor: 8.340

Review 5.  Metabolomics of neural progenitor cells: a novel approach to biomarker discovery.

Authors:  M Maletić-Savatić; L K Vingara; L N Manganas; Y Li; S Zhang; A Sierra; R Hazel; D Smith; M E Wagshul; F Henn; L Krupp; G Enikolopov; H Benveniste; P M Djurić; I Pelczer
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2008-11-06

6.  Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach.

Authors:  Atsushi Fukushima; Miyako Kusano; Henning Redestig; Masanori Arita; Kazuki Saito
Journal:  BMC Syst Biol       Date:  2011-01-01

7.  Chronic myeloid leukemia patients sensitive and resistant to imatinib treatment show different metabolic responses.

Authors:  Jiye A; Sixuan Qian; Guangji Wang; Bei Yan; Sujiang Zhang; Qing Huang; Lingna Ni; Weibin Zha; Linsheng Liu; Bei Cao; Ming Hong; Hanxin Wu; Hua Lu; Jian Shi; Mengjie Li; Jianyong Li
Journal:  PLoS One       Date:  2010-10-08       Impact factor: 3.240

8.  Metabolomic and functional genomic analyses reveal varietal differences in bioactive compounds of cooked rice.

Authors:  Adam L Heuberger; Matthew R Lewis; Ming-Hsuan Chen; Mark A Brick; Jan E Leach; Elizabeth P Ryan
Journal:  PLoS One       Date:  2010-09-23       Impact factor: 3.240

9.  A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis.

Authors:  Ruben Vanholme; Véronique Storme; Bartel Vanholme; Lisa Sundin; Jørgen Holst Christensen; Geert Goeminne; Claire Halpin; Antje Rohde; Kris Morreel; Wout Boerjan
Journal:  Plant Cell       Date:  2012-09-25       Impact factor: 11.277

10.  Enhanced stability of thylakoid membrane proteins and antioxidant competence contribute to drought stress resistance in the tasg1 wheat stay-green mutant.

Authors:  Fengxia Tian; Jiangfeng Gong; Jin Zhang; Meng Zhang; Guokun Wang; Aixiu Li; Wei Wang
Journal:  J Exp Bot       Date:  2013-02-01       Impact factor: 6.992

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