Literature DB >> 15827987

Versatile glycoblotting nanoparticles for high-throughput protein glycomics.

Kenichi Niikura1, Ryosuke Kamitani, Masaki Kurogochi, Rie Uematsu, Yasuro Shinohara, Hiroaki Nakagawa, Kisaburo Deguchi, Kenji Monde, Hirosato Kondo, Shin-Ichiro Nishimura.   

Abstract

We have developed an effective and practical trap-and-release method based on chemoselective ligation of carbohydrates with reactive aminooxyl groups attached to the surface of nanoparticles (referred to as glycoblotting nanoparticles). These glycoblotting nanoparticles were synthesized by UV irradiation of diacetylene-functionalized lipids that contain the aminooxyl group. The glycoblotting nanoparticles captured carbohydrates in aqueous solution under mild conditions and were collected by simple centrifugation. The trapped carbohydrates were effectively released from the nanoparticles under acidic conditions to give pure oligosaccharides. This glycoblotting process reduced the time required for the purification process of carbohydrates to less than 6 h, compared to the several days needed for conventional chromatographic techniques. The oligosaccharides (N-glycan) were released from ovalbumin (glycoprotein) by PNGase F after tryptic digestion. MALDI-TOF mass spectra before purification did not show any significant signals corresponding to N-glycans because these signals were hidden by the large signals of the abundant peptides. However, after purification with the glycoblotting nanoparticles, only signals corresponding to oligosaccharides appeared. We also demonstrated a clear analysis of the oligosaccharides contained in the mice dermis by means of glycoblotting.

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Year:  2005        PMID: 15827987     DOI: 10.1002/chem.200401289

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  2 in total

Review 1.  Fluorescently labelled glycans and their applications.

Authors:  Hongbin Yan; Ravi Shekar Yalagala; Fengyang Yan
Journal:  Glycoconj J       Date:  2015-08-04       Impact factor: 2.916

Review 2.  Large-scale approaches for glycobiology.

Authors:  Christopher T Campbell; Kevin J Yarema
Journal:  Genome Biol       Date:  2005-11-03       Impact factor: 13.583

  2 in total

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