Literature DB >> 15826641

Integration of tools and resources for display and analysis of genomic data for protozoan parasites.

Martin Aslett1, Paul Mooney, Ellen Adlem, Matthew Berriman, Andrew Berry, Christiane Hertz-Fowler, Alasdair C Ivens, Arnaud Kerhornou, Julian Parkhill, Chris S Peacock, Valerie Wood, Marie-Adele Rajandream, Bart Barrell, Adrian Tivey.   

Abstract

Centralisation of tools for analysis of genomic data is paramount in ensuring that research is always carried out on the latest currently available data. As such, World Wide Web sites providing a range of online analyses and displays of data can play a crucial role in guaranteeing consistency of in silico work. In this respect, the protozoan parasite research community is served by several resources, either focussing on data and tools for one species or taking a broader view and providing tools for analysis of data from many species, thereby facilitating comparative studies. In this paper, we give a broad overview of the online resources available. We then focus on the GeneDB project, detailing the features and tools currently available through it. Finally, we discuss data curation and its importance in keeping genomic data 'relevant' to the research community.

Mesh:

Year:  2005        PMID: 15826641     DOI: 10.1016/j.ijpara.2005.01.011

Source DB:  PubMed          Journal:  Int J Parasitol        ISSN: 0020-7519            Impact factor:   3.981


  3 in total

1.  LeishCyc: a biochemical pathways database for Leishmania major.

Authors:  Maria A Doyle; James I MacRae; David P De Souza; Eleanor C Saunders; Malcolm J McConville; Vladimir A Likić
Journal:  BMC Syst Biol       Date:  2009-06-05

2.  Genomic information infrastructure after the deluge.

Authors:  Julian Parkhill; Ewan Birney; Paul Kersey
Journal:  Genome Biol       Date:  2010-07-26       Impact factor: 13.583

3.  GeneDB--an annotation database for pathogens.

Authors:  Flora J Logan-Klumpler; Nishadi De Silva; Ulrike Boehme; Matthew B Rogers; Giles Velarde; Jacqueline A McQuillan; Tim Carver; Martin Aslett; Christian Olsen; Sandhya Subramanian; Isabelle Phan; Carol Farris; Siddhartha Mitra; Gowthaman Ramasamy; Haiming Wang; Adrian Tivey; Andrew Jackson; Robin Houston; Julian Parkhill; Matthew Holden; Omar S Harb; Brian P Brunk; Peter J Myler; David Roos; Mark Carrington; Deborah F Smith; Christiane Hertz-Fowler; Matthew Berriman
Journal:  Nucleic Acids Res       Date:  2011-11-23       Impact factor: 16.971

  3 in total

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