Literature DB >> 15821974

The question of Citrus viroid IV as a cocadviroid.

J S Semancik1, G Vidalakis.   

Abstract

It has been suggested that Citrus viroid IV (CVd-IV) be classified as a species within the genus Cocadviroid. This relationship was based on the presence of a terminal conserved hairpin (TCH) and absence of a terminal conserved region (TCR) as specific structural motifs in common with isolates of Coconut cadang-cadang viroid (CCCVd) as well as phylogenetic relationships with members of the genus Cocadviroid. Evidence is presented for a "vestigial" TCR in CVd-IV as well as the introduction of the terminal repeat region (TRR) motif and an alternative sequence analysis that suggests a closer phylogenetic relationship of CVd-IV to isolates of Citrus exocortis viroid (CEVd), a species within the genus Pospiviroid than to CCCVd. This position is further supported by the striking similarity of biological properties between CVd-IV and CEVd with the suggestion offered that biological evidence be considered for specific adjustments to any overall classification scheme for viroids.

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Year:  2005        PMID: 15821974     DOI: 10.1007/s00705-005-0499-8

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  5 in total

1.  Genetic diversity and phylogenetic analysis of Australian grapevine viroid (AGVd) isolated from different grapevines in China.

Authors:  Dongmei Jiang; Shan Peng; Zujian Wu; Zhuomin Cheng; Shifang Li
Journal:  Virus Genes       Date:  2008-11-30       Impact factor: 2.332

2.  Transcriptome sequencing reveals novel Citrus bark cracking viroid (CBCVd) variants from citrus and their molecular characterization.

Authors:  Yafei Wang; Sagheer Atta; Xuefeng Wang; Fangyun Yang; Changyong Zhou; Mengji Cao
Journal:  PLoS One       Date:  2018-06-11       Impact factor: 3.240

3.  Molecular characterization of grapevine yellow speckle viroid-2 (GYSVd-2).

Authors:  Dongmei Jiang; Zhixiang Zhang; Zujian Wu; Rui Guo; Hongqing Wang; Peige Fan; Shifang Li
Journal:  Virus Genes       Date:  2009-03-03       Impact factor: 2.332

4.  Genome-Wide Transcriptomic Analysis Reveals Insights into the Response to Citrus bark cracking viroid (CBCVd) in Hop (Humulus lupulus L.).

Authors:  Ajay Kumar Mishra; Atul Kumar; Deepti Mishra; Vishnu Sukumari Nath; Jernej Jakše; Tomáš Kocábek; Uday Kumar Killi; Filis Morina; Jaroslav Matoušek
Journal:  Viruses       Date:  2018-10-18       Impact factor: 5.048

5.  Reassessing species demarcation criteria in viroid taxonomy by pairwise identity matrices.

Authors:  Michela Chiumenti; Beatriz Navarro; Thierry Candresse; Ricardo Flores; Francesco Di Serio
Journal:  Virus Evol       Date:  2021-01-25
  5 in total

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