Literature DB >> 15817696

NodMutDB: a database for genes and mutants involved in symbiosis.

Chunhong Mao1, Jing Qiu, Chunxia Wang, Trevor C Charles, Bruno W S Sobral.   

Abstract

UNLABELLED: Functional genomics research is producing large amounts of data on the functions of individual genes related to symbiosis. We have developed a relational database, NodMutDB (Nodulation Mutant Database), to provide a comprehensive resource for depositing, organizing and retrieving information on symbiosis-related genes, mutants and published literature. NodMutDB brings together new studies and existing mutant-based literature to facilitate our understanding of how genes function in symbiotic processes in both Rhizobia and their host plants. AVAILABILITY: http://nodmutdb.vbi.vt.edu CONTACT: cmao@vbi.vt.edu SUPPLEMENTARY INFORMATION: Database schema and data curation model are available at http://nodmutdb.vbi.vt.edu.

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Year:  2005        PMID： 15817696     DOI： 10.1093/bioinformatics/bti427

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  Comparative genomics of rhizobia nodulating soybean suggests extensive recruitment of lineage-specific genes in adaptations.

Authors:  Chang Fu Tian; Yuan Jie Zhou; Yan Ming Zhang; Qin Qin Li; Yun Zeng Zhang; Dong Fang Li; Shuang Wang; Jun Wang; Luz B Gilbert; Ying Rui Li; Wen Xin Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

2.  Genetic divergence of bradyrhizobium strains nodulating soybeans as revealed by multilocus sequence analysis of genes inside and outside the symbiosis island.

Authors:  Xing Xing Zhang; Hui Juan Guo; Rui Wang; Xin Hua Sui; Yan Ming Zhang; En Tao Wang; Chang Fu Tian; Wen Xin Chen
Journal:  Appl Environ Microbiol       Date:  2014-03-14       Impact factor: 4.792

3.  Replicon-dependent differentiation of symbiosis-related genes in Sinorhizobium strains nodulating Glycine max.

Authors:  Hui Juan Guo; En Tao Wang; Xing Xing Zhang; Qin Qin Li; Yan Ming Zhang; Chang Fu Tian; Wen Xin Chen
Journal:  Appl Environ Microbiol       Date:  2013-12-06       Impact factor: 4.792

4.  Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia.

Authors:  Claire Amadou; Géraldine Pascal; Sophie Mangenot; Michelle Glew; Cyril Bontemps; Delphine Capela; Sébastien Carrère; Stéphane Cruveiller; Carole Dossat; Aurélie Lajus; Marta Marchetti; Véréna Poinsot; Zoé Rouy; Bertrand Servin; Maged Saad; Chantal Schenowitz; Valérie Barbe; Jacques Batut; Claudine Médigue; Catherine Masson-Boivin
Journal:  Genome Res       Date:  2008-05-19       Impact factor: 9.043

5.  A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.

Authors:  Anke Becker; Melanie J Barnett; Delphine Capela; Michael Dondrup; Paul-Bertram Kamp; Elizaveta Krol; Burkhard Linke; Silvia Rüberg; Kai Runte; Brenda K Schroeder; Stefan Weidner; Svetlana N Yurgel; Jacques Batut; Sharon R Long; Alfred Pühler; Alexander Goesmann
Journal:  J Biotechnol       Date:  2008-12-06       Impact factor: 3.307

6.  Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.

Authors:  Marco Galardini; Alessio Mengoni; Matteo Brilli; Francesco Pini; Antonella Fioravanti; Susan Lucas; Alla Lapidus; Jan-Fang Cheng; Lynne Goodwin; Samuel Pitluck; Miriam Land; Loren Hauser; Tanja Woyke; Natalia Mikhailova; Natalia Ivanova; Hajnalka Daligault; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Hazuki Teshima; Stefano Mocali; Marco Bazzicalupo; Emanuele G Biondi
Journal:  BMC Genomics       Date:  2011-05-12       Impact factor: 3.969

7.  In silico insights into the symbiotic nitrogen fixation in Sinorhizobium meliloti via metabolic reconstruction.

Authors:  Hansheng Zhao; Mao Li; Kechi Fang; Wenfeng Chen; Jing Wang
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

8.  Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii.

Authors:  Jian Jiao; Meng Ni; Biliang Zhang; Ziding Zhang; J Peter W Young; Ting-Fung Chan; Wen Xin Chen; Hon-Ming Lam; Chang Fu Tian
Journal:  PLoS Genet       Date:  2018-05-24       Impact factor: 5.917
  8 in total

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