Literature DB >> 15816174

Poisson-Nernst-Planck theory approach to the calculation of current through biological ion channels.

Rob D Coalson1, Maria G Kurnikova.   

Abstract

The Poisson-Nernst-Planck (PNP) theory of electro-diffusion is reviewed. Techniques for numerical solution of the three-dimensional PNP equations are summarized, and several illustrative applications to ion transport through protein channels are presented. Strengths and weaknesses of the theory are discussed, as well as attempts to improve it via increasingly realistic evaluation of the force acting on each ion due to the protein/membrane environment.

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Year:  2005        PMID： 15816174     DOI： 10.1109/tnb.2004.842495

Source DB:  PubMed          Journal:  IEEE Trans Nanobioscience        ISSN： 1536-1241            Impact factor:   2.935


  21 in total

1.  Solution of the Poisson-Nernst-Planck equations in the cell-substrate interface.

Authors:  M Pabst; G Wrobel; S Ingebrandt; F Sommerhage; A Offenhäusser
Journal:  Eur Phys J E Soft Matter       Date:  2007-08-29       Impact factor: 1.890

2.  Structure of functional Staphylococcus aureus alpha-hemolysin channels in tethered bilayer lipid membranes.

Authors:  Duncan J McGillivray; Gintaras Valincius; Frank Heinrich; Joseph W F Robertson; David J Vanderah; Wilma Febo-Ayala; Ilja Ignatjev; Mathias Lösche; John J Kasianowicz
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

3.  Model-based prediction of the alpha-hemolysin structure in the hexameric state.

Authors:  Simone Furini; Carmen Domene; Michele Rossi; Marco Tartagni; Silvio Cavalcanti
Journal:  Biophys J       Date:  2008-05-23       Impact factor: 4.033

4.  A method for treating the passage of a charged hard sphere ion as it passes through a sharp dielectric boundary.

Authors:  Dezso Boda; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  J Chem Phys       Date:  2011-08-14       Impact factor: 3.488

5.  Molecular dynamics simulation of the antiamoebin ion channel: linking structure and conductance.

Authors:  Michael A Wilson; Chenyu Wei; Pär Bjelkmar; B A Wallace; Andrew Pohorille
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

Review 6.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

Review 7.  Interacting ions in biophysics: real is not ideal.

Authors:  Bob Eisenberg
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

8.  Validity of the Electrodiffusion Model for Calculating Conductance of Simple Ion Channels.

Authors:  Andrew Pohorille; Michael A Wilson; Chenyu Wei
Journal:  J Phys Chem B       Date:  2016-12-12       Impact factor: 2.991

9.  A molecular level prototype for mechanoelectrical transducer in mammalian hair cells.

Authors:  Jinkyoung Park; Guo-Wei Wei
Journal:  J Comput Neurosci       Date:  2013-04-28       Impact factor: 1.621

10.  Multiscale Multiphysics and Multidomain Models I: Basic Theory.

Authors:  Guo-Wei Wei
Journal:  J Theor Comput Chem       Date:  2013-12       Impact factor: 0.939
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