Literature DB >> 15814564

VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data.

Albert J Vilella1, Angel Blanco-Garcia, Stephan Hutter, Julio Rozas.   

Abstract

SUMMARY: VeriScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale. Among other features, the software (1) can conduct many population genetic analyses; (2) incorporates a multiresolution wavelet transform-based method that allows capturing relevant information from DNA polymorphism data; (3) facilitates the visualization of the results in the most commonly used genome browsers.

Mesh：

Year:  2005        PMID： 15814564     DOI： 10.1093/bioinformatics/bti403

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  67 in total

1.  Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition.

Authors:  Shu-Dan Yeh; Tiffanie Do; Carolus Chan; Adriana Cordova; Francisco Carranza; Eugene A Yamamoto; Mashya Abbassi; Kania A Gandasetiawan; Pablo Librado; Elisabetta Damia; Patrizio Dimitri; Julio Rozas; Daniel L Hartl; John Roote; José M Ranz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

2.  Phred-Phrap package to analyses tools: a pipeline to facilitate population genetics re-sequencing studies.

Authors:  Moara Machado; Wagner Cs Magalhães; Allan Sene; Bruno Araújo; Alessandra C Faria-Campos; Stephen J Chanock; Leandro Scott; Guilherme Oliveira; Eduardo Tarazona-Santos; Maira R Rodrigues
Journal:  Investig Genet       Date:  2011-02-01

3.  X-linked variation in immune response in Drosophila melanogaster.

Authors:  Erin M Hill-Burns; Andrew G Clark
Journal:  Genetics       Date:  2009-10-12       Impact factor: 4.562

4.  Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls.

Authors:  Periklis Makrythanasis; Philipp Kapranov; Lucia Bartoloni; Alexandre Reymond; Samuel Deutsch; Roderic Guigó; France Denoeud; Jorg Drenkow; Colette Rossier; Francesca Ariani; Valeria Capra; Laurent Excoffier; Alessandra Renieri; Thomas R Gingeras; Stylianos E Antonarakis
Journal:  Hum Mutat       Date:  2009-09       Impact factor: 4.878

5.  Evolution of Mating Systems in Basidiomycetes and the Genetic Architecture Underlying Mating-Type Determination in the Yeast Leucosporidium scottii.

Authors:  Teresa M Maia; Susana T Lopes; João M G C F Almeida; Luiz H Rosa; José Paulo Sampaio; Paula Gonçalves; Marco A Coelho
Journal:  Genetics       Date:  2015-07-14       Impact factor: 4.562

6.  Conservation of recombination hotspots in yeast.

Authors:  Isheng J Tsai; Austin Burt; Vassiliki Koufopanou
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

7.  Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle.

Authors:  Isheng J Tsai; Douda Bensasson; Austin Burt; Vassiliki Koufopanou
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

8.  Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved.

Authors:  Iñaki Comas; Jaidip Chakravartti; Peter M Small; James Galagan; Stefan Niemann; Kristin Kremer; Joel D Ernst; Sebastien Gagneux
Journal:  Nat Genet       Date:  2010-05-23       Impact factor: 38.330

9.  Long- and short-term selective forces on malaria parasite genomes.

Authors:  Sanne Nygaard; Alexander Braunstein; Gareth Malsen; Stijn Van Dongen; Paul P Gardner; Anders Krogh; Thomas D Otto; Arnab Pain; Matthew Berriman; Jon McAuliffe; Emmanouil T Dermitzakis; Daniel C Jeffares
Journal:  PLoS Genet       Date:  2010-09-09       Impact factor: 5.917

10.  High level of structural polymorphism driven by mobile elements in the Hox genomic region of the Chaetognath Spadella cephaloptera.

Authors:  Ferdinand Marlétaz; Gabor Gyapay; Yannick Le Parco
Journal:  Genome Biol Evol       Date:  2010-08-01       Impact factor: 3.416
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