Literature DB >> 15811793

Metal ions and RNA folding: a highly charged topic with a dynamic future.

Sarah A Woodson1.   

Abstract

Metal ions are required to stabilize RNA tertiary structure and to begin the folding process. How different metal ions enable RNAs to fold depends on the electrostatic potential of the RNA and correlated fluctuations in the positions of the ions themselves. Theoretical models, fluorescence spectroscopy, small angle scattering and structural biology reveal that metal ions alter the RNA dynamics and folding transition states. Specifically coordinated divalent metal ions mediate conformational rearrangements within ribozyme active sites.

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Year:  2005        PMID: 15811793     DOI: 10.1016/j.cbpa.2005.02.004

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  153 in total

1.  Basis for ligand discrimination between ON and OFF state riboswitch conformations: the case of the SAM-I riboswitch.

Authors:  Vamsi Krishna Boyapati; Wei Huang; Jessica Spedale; Fareed Aboul-Ela
Journal:  RNA       Date:  2012-04-27       Impact factor: 4.942

2.  Ionic strength-dependent persistence lengths of single-stranded RNA and DNA.

Authors:  Huimin Chen; Steve P Meisburger; Suzette A Pabit; Julie L Sutton; Watt W Webb; Lois Pollack
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

3.  Predicting ion binding properties for RNA tertiary structures.

Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

4.  Laser-assisted single-molecule refolding (LASR).

Authors:  Rui Zhao; Myles Marshall; Elvin A Alemán; Rajan Lamichhane; Andrew Feig; David Rueda
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

5.  Identification and characterization of anion binding sites in RNA.

Authors:  Jeffrey S Kieft; Elaine Chase; David A Costantino; Barbara L Golden
Journal:  RNA       Date:  2010-04-21       Impact factor: 4.942

6.  A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P.

Authors:  John Hsieh; Kristin S Koutmou; David Rueda; Markos Koutmos; Nils G Walter; Carol A Fierke
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

Review 7.  Taming free energy landscapes with RNA chaperones.

Authors:  Sarah A Woodson
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

8.  Square-shaped RNA particles from different RNA folds.

Authors:  Isil Severcan; Cody Geary; Erik Verzemnieks; Arkadiusz Chworos; Luc Jaeger
Journal:  Nano Lett       Date:  2009-03       Impact factor: 11.189

9.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids.

Authors:  Yu Bai; Max Greenfeld; Kevin J Travers; Vincent B Chu; Jan Lipfert; Sebastian Doniach; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-11-09       Impact factor: 15.419

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