Literature DB >> 15808322

Use of housekeeping gene sequencing for species identification of viridans streptococci.

Pattarachai Kiratisin1, Li Li, Patrick R Murray, Steven H Fischer.   

Abstract

Based on the genetic analysis of 20 reference strains, we describe an approach using the sequencing of 2 housekeeping genes, zwf and gki, to identify members of the mitis-sanguinis group of viridans streptococci to the species level, with a better discrimination compared with 16S rDNA sequencing. This approach also suggested that some reference strains may not be correctly classified.

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Year:  2005        PMID： 15808322     DOI： 10.1016/j.diagmicrobio.2004.12.001

Source DB:  PubMed          Journal:  Diagn Microbiol Infect Dis        ISSN： 0732-8893            Impact factor:   2.803


  12 in total

1.  Non-culture-based analysis of bacterial populations from patients with chronic rhinosinusitis.

Authors:  Daniel A Power; Jeremy P Burton; Chris N Chilcott; John R Tagg; Patrick J Dawes
Journal:  J Clin Microbiol       Date:  2005-11       Impact factor: 5.948

2.  Identification of alpha-hemolytic streptococci by pyrosequencing the 16S rRNA gene and by use of VITEK 2.

Authors:  Marjo Haanperä; Jari Jalava; Pentti Huovinen; Olli Meurman; Kaisu Rantakokko-Jalava
Journal:  J Clin Microbiol       Date:  2007-01-10       Impact factor: 5.948

3.  Whole genome sequencing as a tool for phylogenetic analysis of clinical strains of Mitis group streptococci.

Authors:  L H Rasmussen; R Dargis; K Højholt; J J Christensen; O Skovgaard; U S Justesen; F S Rosenvinge; C Moser; O Lukjancenko; S Rasmussen; X C Nielsen
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2016-06-20       Impact factor: 3.267

4.  Oral streptococcal bacteremia in hospitalized patients: taxonomic identification and clinical characterization.

Authors:  Todd Kitten; Cindy L Munro; Nicai Q Zollar; Sehmi P Lee; Resham D Patel
Journal:  J Clin Microbiol       Date:  2011-12-21       Impact factor: 5.948

5.  Use of the Phoenix automated system for identification of Streptococcus and Enterococcus spp.

Authors:  Gioconda Brigante; Francesco Luzzaro; Alessia Bettaccini; Gianluigi Lombardi; Francesca Meacci; Beatrice Pini; Stefania Stefani; Antonio Toniolo
Journal:  J Clin Microbiol       Date:  2006-09       Impact factor: 5.948

6.  Streptococcus tigurinus, a novel member of the Streptococcus mitis group, causes invasive infections.

Authors:  Andrea Zbinden; Nicolas J Mueller; Philip E Tarr; Gerhard Eich; Bettina Schulthess; Anna S Bahlmann; Peter M Keller; Guido V Bloemberg
Journal:  J Clin Microbiol       Date:  2012-07-03       Impact factor: 5.948

7.  High-resolution genotyping of Campylobacter species by use of PCR and high-throughput mass spectrometry.

Authors:  James C Hannis; Sheri M Manalili; Thomas A Hall; Raymond Ranken; Neill White; Rangarajan Sampath; Lawrence B Blyn; David J Ecker; Robert E Mandrell; Clifton K Fagerquist; Anna H Bates; William G Miller; Steven A Hofstadler
Journal:  J Clin Microbiol       Date:  2008-02-13       Impact factor: 5.948

8.  Identification of clinically relevant nonhemolytic Streptococci on the basis of sequence analysis of 16S-23S intergenic spacer region and partial gdh gene.

Authors:  Xiaohui Chen Nielsen; Ulrik Stenz Justesen; Rimtas Dargis; Michael Kemp; Jens Jørgen Christensen
Journal:  J Clin Microbiol       Date:  2009-02-04       Impact factor: 5.948

9.  Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies.

Authors:  Karsten Henne; Jing Li; Mark Stoneking; Olga Kessler; Hildegard Schilling; Anne Sonanini; Georg Conrads; Hans-Peter Horz
Journal:  BMC Evol Biol       Date:  2014-08-22       Impact factor: 3.260

10.  Mining housekeeping genes with a Naive Bayes classifier.

Authors:  Luna De Ferrari; Stuart Aitken
Journal:  BMC Genomics       Date:  2006-10-30       Impact factor: 3.969
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