Literature DB >> 15808303

A 7872 cDNA microarray and its use in bovine functional genomics.

Robin E Everts1, Mark R Band, Z Lewis Liu, Charu G Kumar, Lei Liu, Juan J Loor, Rosane Oliveira, Harris A Lewin.   

Abstract

The strategy used to create and annotate a 7872 cDNA microarray from cattle placenta and spleen cDNA sequences is described. This microarray contains approximately 6300 unique genes, as determined by BLASTN and TBLASTX similarity search against the human and mouse UniGene and draft human genome sequence databases (build 34). Sequences on the array were annotated with gene ontology (GO) terms, thereby facilitating data analysis and interpretation. A total of 3244 genes were annotated with GO terms. The array is rich in sequences encoding transcription factors, signal transducers and cell cycle regulators. Current research being conducted with this array is described, and an overview of planned improvements in our microarray platform for cattle functional genomics is presented.

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Year:  2005        PMID: 15808303     DOI: 10.1016/j.vetimm.2005.02.003

Source DB:  PubMed          Journal:  Vet Immunol Immunopathol        ISSN: 0165-2427            Impact factor:   2.046


  14 in total

1.  Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning.

Authors:  Sadie L Smith; Robin E Everts; X Cindy Tian; Fuliang Du; Li-Ying Sung; Sandra L Rodriguez-Zas; Byeong-Seon Jeong; Jean-Paul Renard; Harris A Lewin; Xiangzhong Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

2.  Endometrium as an early sensor of in vitro embryo manipulation technologies.

Authors:  Nadéra Mansouri-Attia; Olivier Sandra; Julie Aubert; Séverine Degrelle; Robin E Everts; Corinne Giraud-Delville; Yvan Heyman; Laurent Galio; Isabelle Hue; Xiangzhong Yang; X Cindy Tian; Harris A Lewin; Jean-Paul Renard
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-18       Impact factor: 11.205

3.  Microarray analysis of differential gene expression profiles in blood cells of naturally BLV-infected and uninfected Holstein-Friesian cows.

Authors:  P Brym; S Kamiński
Journal:  Mol Biol Rep       Date:  2016-11-03       Impact factor: 2.316

4.  Transferase activity function and system development process are critical in cattle embryo development.

Authors:  Heather A Adams; Bruce R Southey; Robin E Everts; Sadie L Marjani; Cindy X Tian; Harris A Lewin; Sandra L Rodriguez-Zas
Journal:  Funct Integr Genomics       Date:  2010-09-16       Impact factor: 3.410

5.  Comparative analysis of the early transcriptome of Brucella abortus--infected monocyte-derived macrophages from cattle naturally resistant or susceptible to brucellosis.

Authors:  C A Rossetti; C L Galindo; R E Everts; H A Lewin; H R Garner; L G Adams
Journal:  Res Vet Sci       Date:  2010-10-06       Impact factor: 2.534

6.  Functional annotation of novel lineage-specific genes using co-expression and promoter analysis.

Authors:  Charu G Kumar; Robin E Everts; Juan J Loor; Harris A Lewin
Journal:  BMC Genomics       Date:  2010-03-09       Impact factor: 3.969

7.  Systems biology analysis of gene expression during in vivo Mycobacterium avium paratuberculosis enteric colonization reveals role for immune tolerance.

Authors:  Sangeeta Khare; Sara D Lawhon; Kenneth L Drake; Jairo E S Nunes; Josely F Figueiredo; Carlos A Rossetti; Tamara Gull; Robin E Everts; Harris A Lewin; Cristi L Galindo; Harold R Garner; Leslie Garry Adams
Journal:  PLoS One       Date:  2012-08-17       Impact factor: 3.240

8.  Role of SPI-1 secreted effectors in acute bovine response to Salmonella enterica Serovar Typhimurium: a systems biology analysis approach.

Authors:  Sara D Lawhon; Sangeeta Khare; Carlos A Rossetti; Robin E Everts; Cristi L Galindo; Sarah A Luciano; Josely F Figueiredo; Jairo E S Nunes; Tamara Gull; George S Davidson; Kenneth L Drake; Harold R Garner; Harris A Lewin; Andreas J Bäumler; Leslie Garry Adams
Journal:  PLoS One       Date:  2011-11-11       Impact factor: 3.240

9.  Uncoupled embryonic and extra-embryonic tissues compromise blastocyst development after somatic cell nuclear transfer.

Authors:  Séverine A Degrelle; Florence Jaffrezic; Evelyne Campion; Kim-Anh Lê Cao; Daniel Le Bourhis; Christophe Richard; Nathalie Rodde; Renaud Fleurot; Robin E Everts; Jérôme Lecardonnel; Yvan Heyman; Xavier Vignon; Xiangzhong Yang; Xiuchun C Tian; Harris A Lewin; Jean-Paul Renard; Isabelle Hue
Journal:  PLoS One       Date:  2012-06-06       Impact factor: 3.240

10.  Construction and validation of a Bovine Innate Immune Microarray.

Authors:  Laurelea Donaldson; Tony Vuocolo; Christian Gray; Ylva Strandberg; Antonio Reverter; Sean McWilliam; Yonghong Wang; Keren Byrne; Ross Tellam
Journal:  BMC Genomics       Date:  2005-09-22       Impact factor: 3.969

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