Literature DB >> 15806343

A linkage map of chickpea (Cicer arietinum L.) based on populations from Kabuli x Desi crosses: location of genes for resistance to fusarium wilt race 0.

M J Cobos1, M J Fernández, J Rubio, M Kharrat, M T Moreno, J Gil, T Millán.   

Abstract

Two recombinant inbred line (RIL) populations derived from intraspecific crosses with a common parental line (JG62) were employed to develop a chickpea genetic map. Molecular markers, flower colour, double podding, seed coat thickness and resistance to fusarium wilt race 0 (FOC-0) were included in the study. Joint segregation analysis involved a total of 160 markers and 159 RILs. Ten linkage groups (LGs) were obtained that included morphological markers and 134 molecular markers (3 ISSRs, 13 STMSs and 118 RAPDs). Flower colour (B/b) and seed coat thickness (Tt/tt) appeared to be linked to STMS (GAA47). The single-/double-podding locus was located on LG9 jointly with two RAPD markers and STMS TA80. LG3 included a gene for resistance to FOC-0 (Foc0(1)/foc0(1)) flanked by RAPD marker OPJ20(600) and STMS marker TR59. The association of this LG with FOC-0 resistance was confirmed by QTL analysis in the CA2139 x JG62 RIL population where two genes were involved in the resistance reaction. The STMS markers enabled comparison of LGs with preceding maps.

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Year:  2005        PMID： 15806343     DOI： 10.1007/s00122-005-1980-1

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  21 in total

1.  DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.

Authors:  J G Williams; A R Kubelik; K J Livak; J A Rafalski; S V Tingey
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

2.  Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.

Authors:  E S Lander; D Botstein
Journal:  Genetics       Date:  1989-01       Impact factor: 4.562

3.  Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome.

Authors:  P Winter; T Pfaff; S M Udupa; B Hüttel; P C Sharma; S Sahi; R Arreguin-Espinoza; F Weigand; F J Muehlbauer; G Kahl
Journal:  Mol Gen Genet       Date:  1999-08

4.  Molecular markers closely linked to fusarium resistance genes in chickpea show significant alignments to pathogenesis-related genes located on Arabidopsis chromosomes 1 and 5.

Authors:  A-M Benko-Iseppon; P Winter; B Huettel; C Staginnus; F J Muehlbauer; G Kahl
Journal:  Theor Appl Genet       Date:  2003-04-23       Impact factor: 5.699

5.  Integration of sequence tagged microsatellite sites to the chickpea genetic map.

Authors:  M. Tekeoglu; N. Rajesh; J. Muehlbauer
Journal:  Theor Appl Genet       Date:  2002-07-02       Impact factor: 5.699

6.  Identification of an STMS marker for the double-podding gene in chickpea.

Authors:  N. Rajesh; A. Tullu; J. Gil; S. Gupta; K. Ranjekar; J. Muehlbauer
Journal:  Theor Appl Genet       Date:  2002-06-22       Impact factor: 5.699

7.  Linkage among isozyme, RFLP and RAPD markers in Vicia faba.

Authors:  A M Torres; N F Weeden; A Martín
Journal:  Theor Appl Genet       Date:  1993-02       Impact factor: 5.699

8.  An intraspecific linkage map of the chickpea ( Cicer arietinum L.) genome based on sequence tagged microsatellite site and resistance gene analog markers.

Authors:  H Flandez-Galvez; R Ford; E C K Pang; P W J Taylor
Journal:  Theor Appl Genet       Date:  2003-02-20       Impact factor: 5.699

9.  Preliminary investigation of QTLs associated with seedling resistance to ascochyta blight from Cicer echinospermum, a wild relative of chickpea.

Authors:  B C Y Collard; E C K Pang; P K Ades; P W J Taylor
Journal:  Theor Appl Genet       Date:  2003-05-24       Impact factor: 5.699

10.  Genetic control and linkage relations of additional isozyme markers in chick-pea.

Authors:  P M Gaur; A E Slinkard
Journal:  Theor Appl Genet       Date:  1990-11       Impact factor: 5.699
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  16 in total

1.  Fine mapping for double podding gene in chickpea.

Authors:  L Ali; A Deokar; C Caballo; B Tar'an; J Gil; W Chen; T Millan; J Rubio
Journal:  Theor Appl Genet       Date:  2015-10-03       Impact factor: 5.699

2.  Development of molecular map and identification of QTLs linked to Fusarium wilt resistance in chickpea.

Authors:  Pavankumar Jingade; R L Ravikumar
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

3.  Characterization and genetic analysis of an EIN4-like sequence (CaETR-1) located in QTL(AR1) implicated in ascochyta blight resistance in chickpea.

Authors:  E Madrid; P N Rajesh; J Rubio; J Gil; T Millán; W Chen
Journal:  Plant Cell Rep       Date:  2012-01-12       Impact factor: 4.570

4.  Integration of new CAPS and dCAPS-RGA markers into a composite chickpea genetic map and their association with disease resistance.

Authors:  Carmen Palomino; M D Fernández-Romero; J Rubio; A Torres; M T Moreno; T Millán
Journal:  Theor Appl Genet       Date:  2008-11-26       Impact factor: 5.699

5.  Development of an integrated intraspecific map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations.

Authors:  P Radhika; S J M Gowda; N Y Kadoo; L B Mhase; B M Jamadagni; M N Sainani; S Chandra; V S Gupta
Journal:  Theor Appl Genet       Date:  2007-05-15       Impact factor: 5.699

6.  A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea.

Authors:  Alice Kujur; Deepak Bajaj; Hari D Upadhyaya; Shouvik Das; Rajeev Ranjan; Tanima Shree; Maneesha S Saxena; Saurabh Badoni; Vinod Kumar; Shailesh Tripathi; C L L Gowda; Shivali Sharma; Sube Singh; Akhilesh K Tyagi; Swarup K Parida
Journal:  Sci Rep       Date:  2015-06-10       Impact factor: 4.379

7.  Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea.

Authors:  Shouvik Das; Hari D Upadhyaya; Deepak Bajaj; Alice Kujur; Saurabh Badoni; Vinod Kumar; Shailesh Tripathi; C L Laxmipathi Gowda; Shivali Sharma; Sube Singh; Akhilesh K Tyagi; Swarup K Parida
Journal:  DNA Res       Date:  2015-04-27       Impact factor: 4.458

8.  A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea.

Authors:  Deepak Bajaj; Hari D Upadhyaya; Yusuf Khan; Shouvik Das; Saurabh Badoni; Tanima Shree; Vinod Kumar; Shailesh Tripathi; C L L Gowda; Sube Singh; Shivali Sharma; Akhilesh K Tyagi; Debasis Chattopdhyay; Swarup K Parida
Journal:  Sci Rep       Date:  2015-03-19       Impact factor: 4.379

9.  mQTL-seq delineates functionally relevant candidate gene harbouring a major QTL regulating pod number in chickpea.

Authors:  Shouvik Das; Mohar Singh; Rishi Srivastava; Deepak Bajaj; Maneesha S Saxena; Jai C Rana; Kailash C Bansal; Akhilesh K Tyagi; Swarup K Parida
Journal:  DNA Res       Date:  2015-12-19       Impact factor: 4.458

10.  Transcriptional profiling of chickpea genes differentially regulated in response to high-salinity, cold and drought.

Authors:  Nitin L Mantri; Rebecca Ford; Tristan E Coram; Edwin C K Pang
Journal:  BMC Genomics       Date:  2007-09-02       Impact factor: 3.969
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